miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 5' -54.5 NC_003521.1 + 66959 0.66 0.979668
Target:  5'- --uGGCGCUGCGGCaggaCGAGcGCAg -3'
miRNA:   3'- ccuCUGCGACGCCGagaaGUUCuCGU- -5'
14136 5' -54.5 NC_003521.1 + 62398 0.68 0.948225
Target:  5'- cGGAGACGCaggaccucgGCGGCUaccagugUCu-GGGCAu -3'
miRNA:   3'- -CCUCUGCGa--------CGCCGAga-----AGuuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 54288 0.67 0.952318
Target:  5'- aGAGGcCGUUGCGGCUggcCAcguAGAGCAg -3'
miRNA:   3'- cCUCU-GCGACGCCGAgaaGU---UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 35210 0.66 0.96952
Target:  5'- aGGGGGCGC-GCGGgUCggaucGAGCGu -3'
miRNA:   3'- -CCUCUGCGaCGCCgAGaaguuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 60818 0.66 0.96952
Target:  5'- cGAGcCGCUGCuGGC-CUUCAGuAGCc -3'
miRNA:   3'- cCUCuGCGACG-CCGaGAAGUUcUCGu -5'
14136 5' -54.5 NC_003521.1 + 110013 0.66 0.974967
Target:  5'- gGGAGAUGUgcaccCGGCUC-UCGuGGGCGc -3'
miRNA:   3'- -CCUCUGCGac---GCCGAGaAGUuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 168465 0.66 0.974967
Target:  5'- uGGGGCGCUgGUGGCUggUCAGGucgaucaugGGCGg -3'
miRNA:   3'- cCUCUGCGA-CGCCGAgaAGUUC---------UCGU- -5'
14136 5' -54.5 NC_003521.1 + 59656 0.66 0.974967
Target:  5'- cGGcAGACGCUgGCGcGC-CUggAGGAGCu -3'
miRNA:   3'- -CC-UCUGCGA-CGC-CGaGAagUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 73679 0.66 0.977408
Target:  5'- cGAGGCGCccaaGGCgCUgcUCAAGAGCu -3'
miRNA:   3'- cCUCUGCGacg-CCGaGA--AGUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 113571 0.68 0.943906
Target:  5'- aGGAgGACGCgGUGGggCUgggccUCGGGGGCAa -3'
miRNA:   3'- -CCU-CUGCGaCGCCgaGA-----AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 111395 0.68 0.928538
Target:  5'- aGGGGACGCgcugcaGCGGCUCccccauuucugCAAGcgGGCGg -3'
miRNA:   3'- -CCUCUGCGa-----CGCCGAGaa---------GUUC--UCGU- -5'
14136 5' -54.5 NC_003521.1 + 28904 0.68 0.924325
Target:  5'- cGAGACGCUGCGcgacuacaacguGCUCUUCucuauGGCc -3'
miRNA:   3'- cCUCUGCGACGC------------CGAGAAGuuc--UCGu -5'
14136 5' -54.5 NC_003521.1 + 112066 0.71 0.835841
Target:  5'- uGGAgGACGCcGCGGUggggaUCAGGGGCGg -3'
miRNA:   3'- -CCU-CUGCGaCGCCGaga--AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 220972 0.71 0.851748
Target:  5'- gGGAG-CGCUGCaGCUCcacgUCGcGGGCGa -3'
miRNA:   3'- -CCUCuGCGACGcCGAGa---AGUuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 139915 0.7 0.866881
Target:  5'- aGGAGGCGC-GCuGCUCcUCGGG-GCAc -3'
miRNA:   3'- -CCUCUGCGaCGcCGAGaAGUUCuCGU- -5'
14136 5' -54.5 NC_003521.1 + 37450 0.7 0.881193
Target:  5'- aGGuGACGCUGUgGGCUCgcgCGcGGGCc -3'
miRNA:   3'- -CCuCUGCGACG-CCGAGaa-GUuCUCGu -5'
14136 5' -54.5 NC_003521.1 + 100429 0.69 0.901037
Target:  5'- uGAGAagaaGCgGCGGCgc-UCGGGAGCAg -3'
miRNA:   3'- cCUCUg---CGaCGCCGagaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 218710 0.69 0.901037
Target:  5'- aGGAGACgGCgGCGGCggCgggCGAGaAGCGg -3'
miRNA:   3'- -CCUCUG-CGaCGCCGa-Gaa-GUUC-UCGU- -5'
14136 5' -54.5 NC_003521.1 + 155759 0.69 0.907204
Target:  5'- cGAGACGCUGCucacGCUgcgcaucacCUacaUCAAGGGCAg -3'
miRNA:   3'- cCUCUGCGACGc---CGA---------GA---AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 150645 0.69 0.913142
Target:  5'- cGGGGGCGUgcgcgacgaagGCGGCUCUcCGGcGGCGg -3'
miRNA:   3'- -CCUCUGCGa----------CGCCGAGAaGUUcUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.