Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14136 | 5' | -54.5 | NC_003521.1 | + | 113071 | 1.11 | 0.00468 |
Target: 5'- aGGAGACGCUGCGGCUCUUCAAGAGCAc -3' miRNA: 3'- -CCUCUGCGACGCCGAGAAGUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 164491 | 0.68 | 0.948225 |
Target: 5'- -aAGACGgcCUGCGaGUUCgUCAAGGGCGu -3' miRNA: 3'- ccUCUGC--GACGC-CGAGaAGUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 187274 | 0.67 | 0.952319 |
Target: 5'- aGAGACGCgacaGCGGCaCcUCGacccGGAGCGg -3' miRNA: 3'- cCUCUGCGa---CGCCGaGaAGU----UCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 171653 | 0.66 | 0.981756 |
Target: 5'- ---cGCGCcGCGGCgggCgUCGGGAGCGu -3' miRNA: 3'- ccucUGCGaCGCCGa--GaAGUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 18728 | 0.72 | 0.78404 |
Target: 5'- cGAGACGCUGcCGGCgCUgc-AGGGCGg -3' miRNA: 3'- cCUCUGCGAC-GCCGaGAaguUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 129287 | 0.72 | 0.801926 |
Target: 5'- aGAGGCGCcgGCGGUaCUUUuuGAGCGg -3' miRNA: 3'- cCUCUGCGa-CGCCGaGAAGuuCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 125707 | 0.71 | 0.819214 |
Target: 5'- uGGAGACGCcgGCGGUcaCgaCGGGGGCGg -3' miRNA: 3'- -CCUCUGCGa-CGCCGa-GaaGUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 18676 | 0.7 | 0.866881 |
Target: 5'- cGGGGGCGCUGCaGGaccaUCaUC-AGAGCu -3' miRNA: 3'- -CCUCUGCGACG-CCg---AGaAGuUCUCGu -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 174216 | 0.69 | 0.907204 |
Target: 5'- uGGGGuCGC-GCGGgUCgggCAGGGGCGc -3' miRNA: 3'- -CCUCuGCGaCGCCgAGaa-GUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 84540 | 0.68 | 0.939358 |
Target: 5'- cGAGACGCUGgGGggCUU--GGAGUAc -3' miRNA: 3'- cCUCUGCGACgCCgaGAAguUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 160333 | 0.69 | 0.91885 |
Target: 5'- uGGGcGGCGCgGUGGcCUCcgucgUCGAGGGCGu -3' miRNA: 3'- -CCU-CUGCGaCGCC-GAGa----AGUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 186777 | 0.7 | 0.874142 |
Target: 5'- cGGAGGCgGCggugGUGGCggCggCGGGGGCAa -3' miRNA: 3'- -CCUCUG-CGa---CGCCGa-GaaGUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 185103 | 0.74 | 0.657974 |
Target: 5'- gGGAGGCGCUGCGcGC-CgaCAugcuGGAGCAc -3' miRNA: 3'- -CCUCUGCGACGC-CGaGaaGU----UCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 170848 | 0.69 | 0.91885 |
Target: 5'- cGAGACGCgcguCGGCuUCUccgCGGGGGCGg -3' miRNA: 3'- cCUCUGCGac--GCCG-AGAa--GUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 76465 | 0.73 | 0.707888 |
Target: 5'- uGGAGGuCGCUGUGGCgg--UAGGAGCu -3' miRNA: 3'- -CCUCU-GCGACGCCGagaaGUUCUCGu -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 152403 | 0.7 | 0.874142 |
Target: 5'- uGGAGACGCgcaGCGcCUUcgugCAAGAGCGc -3' miRNA: 3'- -CCUCUGCGa--CGCcGAGaa--GUUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 52759 | 0.68 | 0.939358 |
Target: 5'- gGGAGACGa-GCGGCUCUaCcgcGGCAu -3' miRNA: 3'- -CCUCUGCgaCGCCGAGAaGuucUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 16518 | 0.68 | 0.948225 |
Target: 5'- --cGGCGCU-CGGCUCggCuGGAGCGc -3' miRNA: 3'- ccuCUGCGAcGCCGAGaaGuUCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 38221 | 0.73 | 0.737156 |
Target: 5'- aGGAGGCGCaggGCGGCcUCggCGggcGGGGCGg -3' miRNA: 3'- -CCUCUGCGa--CGCCG-AGaaGU---UCUCGU- -5' |
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14136 | 5' | -54.5 | NC_003521.1 | + | 87332 | 0.71 | 0.819214 |
Target: 5'- uGGAGGCGCaGCuGCgCggCAAGGGCAu -3' miRNA: 3'- -CCUCUGCGaCGcCGaGaaGUUCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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