miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 5' -54.5 NC_003521.1 + 238449 0.73 0.737156
Target:  5'- aGGAGGCGCaggGCGGCcUCggCGggcGGGGCGg -3'
miRNA:   3'- -CCUCUGCGa--CGCCG-AGaaGU---UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 229625 0.66 0.974967
Target:  5'- uGAGGCGC-GaCGGCUCUgaagaCAGGuGCu -3'
miRNA:   3'- cCUCUGCGaC-GCCGAGAa----GUUCuCGu -5'
14136 5' -54.5 NC_003521.1 + 220972 0.71 0.851748
Target:  5'- gGGAG-CGCUGCaGCUCcacgUCGcGGGCGa -3'
miRNA:   3'- -CCUCuGCGACGcCGAGa---AGUuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 218710 0.69 0.901037
Target:  5'- aGGAGACgGCgGCGGCggCgggCGAGaAGCGg -3'
miRNA:   3'- -CCUCUG-CGaCGCCGa-Gaa-GUUC-UCGU- -5'
14136 5' -54.5 NC_003521.1 + 209465 0.67 0.959839
Target:  5'- cGGcGACGUgcaGCGGCUCaUCAGGcuguuuaaaGGCGa -3'
miRNA:   3'- -CCuCUGCGa--CGCCGAGaAGUUC---------UCGU- -5'
14136 5' -54.5 NC_003521.1 + 202174 0.67 0.965235
Target:  5'- aGGAGGCcacuucuucggaUGCGaGCUCcgUCAAGAGCc -3'
miRNA:   3'- -CCUCUGcg----------ACGC-CGAGa-AGUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 201617 0.66 0.979668
Target:  5'- cGAGcccGCGCUGCuGCggacgCUgacCAAGAGCGa -3'
miRNA:   3'- cCUC---UGCGACGcCGa----GAa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 197285 0.66 0.974967
Target:  5'- cGGGGA-GCgggaggGCGGCUCgaCGGGAGa- -3'
miRNA:   3'- -CCUCUgCGa-----CGCCGAGaaGUUCUCgu -5'
14136 5' -54.5 NC_003521.1 + 194429 0.67 0.9665
Target:  5'- aGGGACGCaucUGCGacGCcaUCcUCGAGAGCAu -3'
miRNA:   3'- cCUCUGCG---ACGC--CG--AGaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 187274 0.67 0.952319
Target:  5'- aGAGACGCgacaGCGGCaCcUCGacccGGAGCGg -3'
miRNA:   3'- cCUCUGCGa---CGCCGaGaAGU----UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 186777 0.7 0.874142
Target:  5'- cGGAGGCgGCggugGUGGCggCggCGGGGGCAa -3'
miRNA:   3'- -CCUCUG-CGa---CGCCGa-GaaGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 185103 0.74 0.657974
Target:  5'- gGGAGGCGCUGCGcGC-CgaCAugcuGGAGCAc -3'
miRNA:   3'- -CCUCUGCGACGC-CGaGaaGU----UCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 183910 0.66 0.96952
Target:  5'- uGGAGGCgguGCUGCGGCgCUgucgCGAcGGCc -3'
miRNA:   3'- -CCUCUG---CGACGCCGaGAa---GUUcUCGu -5'
14136 5' -54.5 NC_003521.1 + 174216 0.69 0.907204
Target:  5'- uGGGGuCGC-GCGGgUCgggCAGGGGCGc -3'
miRNA:   3'- -CCUCuGCGaCGCCgAGaa-GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 171653 0.66 0.981756
Target:  5'- ---cGCGCcGCGGCgggCgUCGGGAGCGu -3'
miRNA:   3'- ccucUGCGaCGCCGa--GaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 170848 0.69 0.91885
Target:  5'- cGAGACGCgcguCGGCuUCUccgCGGGGGCGg -3'
miRNA:   3'- cCUCUGCGac--GCCG-AGAa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 168465 0.66 0.974967
Target:  5'- uGGGGCGCUgGUGGCUggUCAGGucgaucaugGGCGg -3'
miRNA:   3'- cCUCUGCGA-CGCCGAgaAGUUC---------UCGU- -5'
14136 5' -54.5 NC_003521.1 + 164491 0.68 0.948225
Target:  5'- -aAGACGgcCUGCGaGUUCgUCAAGGGCGu -3'
miRNA:   3'- ccUCUGC--GACGC-CGAGaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 160333 0.69 0.91885
Target:  5'- uGGGcGGCGCgGUGGcCUCcgucgUCGAGGGCGu -3'
miRNA:   3'- -CCU-CUGCGaCGCC-GAGa----AGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 155759 0.69 0.907204
Target:  5'- cGAGACGCUGCucacGCUgcgcaucacCUacaUCAAGGGCAg -3'
miRNA:   3'- cCUCUGCGACGc---CGA---------GA---AGUUCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.