miRNA display CGI


Results 21 - 40 of 679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 5' -65 NC_003521.1 + 8429 0.69 0.495735
Target:  5'- gUGCCGCaGGCGCAGC--CAGCG-CGa -3'
miRNA:   3'- gGCGGCGgCCGCGUCGccGUCGCuGC- -5'
14140 5' -65 NC_003521.1 + 9963 0.7 0.412542
Target:  5'- aUGCaUGCCaucugGGCGCAGUGGUAGUGAUc -3'
miRNA:   3'- gGCG-GCGG-----CCGCGUCGCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 10496 0.66 0.659835
Target:  5'- gCGCCGgcggggaUGGCGUggccccccaGGCGGC-GCGACa -3'
miRNA:   3'- gGCGGCg------GCCGCG---------UCGCCGuCGCUGc -5'
14140 5' -65 NC_003521.1 + 12120 0.77 0.149953
Target:  5'- gCCGCCGCCgcgcuccuucgGGUGCGGCGGCcuuaauaaAGUGugGa -3'
miRNA:   3'- -GGCGGCGG-----------CCGCGUCGCCG--------UCGCugC- -5'
14140 5' -65 NC_003521.1 + 13435 0.7 0.436612
Target:  5'- gUCGCCGaggaCGacggacgucaaGCGCAGCGGCGGUaGCGc -3'
miRNA:   3'- -GGCGGCg---GC-----------CGCGUCGCCGUCGcUGC- -5'
14140 5' -65 NC_003521.1 + 13893 0.69 0.487057
Target:  5'- uUCGCCGgggggcCCGGCGCGGaGGgGGCcGCGg -3'
miRNA:   3'- -GGCGGC------GGCCGCGUCgCCgUCGcUGC- -5'
14140 5' -65 NC_003521.1 + 13982 0.78 0.143128
Target:  5'- -gGCCuGcCCGGCGCGGCGGCGgGCGAgGa -3'
miRNA:   3'- ggCGG-C-GGCCGCGUCGCCGU-CGCUgC- -5'
14140 5' -65 NC_003521.1 + 14467 0.68 0.531104
Target:  5'- gCCGCCGCucccgCGGCGCuacccGCGG-GGCGcGCGc -3'
miRNA:   3'- -GGCGGCG-----GCCGCGu----CGCCgUCGC-UGC- -5'
14140 5' -65 NC_003521.1 + 14688 0.74 0.23081
Target:  5'- gCCGCCGCUGGUGguGgGGCAuccGCGcCa -3'
miRNA:   3'- -GGCGGCGGCCGCguCgCCGU---CGCuGc -5'
14140 5' -65 NC_003521.1 + 14916 0.75 0.201919
Target:  5'- uCCGUCaCCGGCGCuucgagcgcgAGCGGCAGCGcCa -3'
miRNA:   3'- -GGCGGcGGCCGCG----------UCGCCGUCGCuGc -5'
14140 5' -65 NC_003521.1 + 15337 0.7 0.404703
Target:  5'- -aGCgCGCUGGUGCAGCaGUcGCGACu -3'
miRNA:   3'- ggCG-GCGGCCGCGUCGcCGuCGCUGc -5'
14140 5' -65 NC_003521.1 + 15511 0.72 0.331692
Target:  5'- uCCGgCGCuCGGguugGCGGCGGCAuGUGGCGa -3'
miRNA:   3'- -GGCgGCG-GCCg---CGUCGCCGU-CGCUGC- -5'
14140 5' -65 NC_003521.1 + 15860 0.68 0.503604
Target:  5'- aCCGCUacgaggagacggaGCUGGUGCucuguaugGGCGGCAGC-ACGc -3'
miRNA:   3'- -GGCGG-------------CGGCCGCG--------UCGCCGUCGcUGC- -5'
14140 5' -65 NC_003521.1 + 16291 0.68 0.540093
Target:  5'- gCGCCGUgGGUGCcuaccggcccGGCGGCuucuuCGACGu -3'
miRNA:   3'- gGCGGCGgCCGCG----------UCGCCGuc---GCUGC- -5'
14140 5' -65 NC_003521.1 + 16738 0.69 0.458952
Target:  5'- gCGaCCGCCGGCGCGcGCGcccGCcggaggacgaggagGGUGACGa -3'
miRNA:   3'- gGC-GGCGGCCGCGU-CGC---CG--------------UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 16843 0.71 0.359696
Target:  5'- aCCGUccuCGCCGGCGCAgGCGGaCGucuaCGACGu -3'
miRNA:   3'- -GGCG---GCGGCCGCGU-CGCC-GUc---GCUGC- -5'
14140 5' -65 NC_003521.1 + 16989 0.75 0.215951
Target:  5'- -aGCCGCagggacagcaGGCGCccgcGGUGGCGGCGGCGc -3'
miRNA:   3'- ggCGGCGg---------CCGCG----UCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 17031 0.68 0.504482
Target:  5'- cCCGUCGuCUGGCGgcccaCGGCGGUAaCGGCGc -3'
miRNA:   3'- -GGCGGC-GGCCGC-----GUCGCCGUcGCUGC- -5'
14140 5' -65 NC_003521.1 + 17167 0.68 0.504482
Target:  5'- -gGCCGa-GGCGCAGCgcuGGCAGCugGGCa -3'
miRNA:   3'- ggCGGCggCCGCGUCG---CCGUCG--CUGc -5'
14140 5' -65 NC_003521.1 + 17221 0.69 0.461471
Target:  5'- gCGUCGCCGucGCGCGGUauGGCAaGCGAg- -3'
miRNA:   3'- gGCGGCGGC--CGCGUCG--CCGU-CGCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.