miRNA display CGI


Results 1 - 20 of 679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 5' -65 NC_003521.1 + 34 0.67 0.571009
Target:  5'- gCCGUgGCCGGgaucggugaguCacggaaccgguuuccGCGGCGGCGuGCGGCGg -3'
miRNA:   3'- -GGCGgCGGCC-----------G---------------CGUCGCCGU-CGCUGC- -5'
14140 5' -65 NC_003521.1 + 89 0.7 0.404703
Target:  5'- uUGCCGCgGGCguGCAGggaGGCcgaAGCGGCGg -3'
miRNA:   3'- gGCGGCGgCCG--CGUCg--CCG---UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 175 0.72 0.324947
Target:  5'- gCCGCCGCuuCGGCcucccuGCAcgcccGCGGCaAGCGACa -3'
miRNA:   3'- -GGCGGCG--GCCG------CGU-----CGCCG-UCGCUGc -5'
14140 5' -65 NC_003521.1 + 355 0.68 0.513294
Target:  5'- -aGCUGCCGGa--GGCGGCGccuGCGACc -3'
miRNA:   3'- ggCGGCGGCCgcgUCGCCGU---CGCUGc -5'
14140 5' -65 NC_003521.1 + 392 0.67 0.594936
Target:  5'- gUGUgUGCUGGCGC-GCGGCuGUGACu -3'
miRNA:   3'- gGCG-GCGGCCGCGuCGCCGuCGCUGc -5'
14140 5' -65 NC_003521.1 + 1314 0.69 0.469923
Target:  5'- aCGgCGCCGGCGaC-GUGGC-GCGGCu -3'
miRNA:   3'- gGCgGCGGCCGC-GuCGCCGuCGCUGc -5'
14140 5' -65 NC_003521.1 + 1447 0.66 0.622727
Target:  5'- aCGCCGCCuaGCaacCAGCGGacaaGGgGACGg -3'
miRNA:   3'- gGCGGCGGc-CGc--GUCGCCg---UCgCUGC- -5'
14140 5' -65 NC_003521.1 + 1453 0.7 0.396188
Target:  5'- gCGCCGCCGGUgGCAGCacacgGGCAucccgcuGCaGACGc -3'
miRNA:   3'- gGCGGCGGCCG-CGUCG-----CCGU-------CG-CUGC- -5'
14140 5' -65 NC_003521.1 + 3654 0.7 0.428499
Target:  5'- gCCGCCGCCGucuGCcuCGGCGGCcGgGACc -3'
miRNA:   3'- -GGCGGCGGC---CGc-GUCGCCGuCgCUGc -5'
14140 5' -65 NC_003521.1 + 4350 0.7 0.427692
Target:  5'- aCCGCCGCCGGCGguucgcuCAucGCGGCccGCGuCc -3'
miRNA:   3'- -GGCGGCGGCCGC-------GU--CGCCGu-CGCuGc -5'
14140 5' -65 NC_003521.1 + 5505 0.72 0.324947
Target:  5'- -gGCCGUcuCGGCaggaGUAGCaGCAGCGACGg -3'
miRNA:   3'- ggCGGCG--GCCG----CGUCGcCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 6080 0.72 0.33854
Target:  5'- gCGaCgGCCGGUGCGGCGGCGuuccGCcACGg -3'
miRNA:   3'- gGC-GgCGGCCGCGUCGCCGU----CGcUGC- -5'
14140 5' -65 NC_003521.1 + 6393 0.72 0.305325
Target:  5'- gCGCCGCa---GCuaccGCGGCGGCGACGg -3'
miRNA:   3'- gGCGGCGgccgCGu---CGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 6484 0.67 0.594936
Target:  5'- -gGCagGuCCGGCaGCGGaGGCGGUGACGg -3'
miRNA:   3'- ggCGg-C-GGCCG-CGUCgCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 7070 0.71 0.352542
Target:  5'- aUGCCcCCGGUgagaagaaGCAgacGCGGCGGCGGCGu -3'
miRNA:   3'- gGCGGcGGCCG--------CGU---CGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 7415 0.68 0.513294
Target:  5'- -aGCCaCCGGgGCcaggagccgAGaCGGCAGCGGCa -3'
miRNA:   3'- ggCGGcGGCCgCG---------UC-GCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 7655 0.66 0.65057
Target:  5'- gCgGCCGCCacGGCgGC-GCGGaCAGCGGu- -3'
miRNA:   3'- -GgCGGCGG--CCG-CGuCGCC-GUCGCUgc -5'
14140 5' -65 NC_003521.1 + 7734 0.67 0.594936
Target:  5'- -gGagGgCGGCGCgAGCGGCggaGGCGGCGg -3'
miRNA:   3'- ggCggCgGCCGCG-UCGCCG---UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 7776 0.69 0.481885
Target:  5'- aCGCCGCagacgagccuuacacCaGCGCucgaAGCGGCAGCugGACGg -3'
miRNA:   3'- gGCGGCG---------------GcCGCG----UCGCCGUCG--CUGC- -5'
14140 5' -65 NC_003521.1 + 7970 0.72 0.337851
Target:  5'- gUCGCgGCCGGgagggucCGCGGCGGCGGgGGa- -3'
miRNA:   3'- -GGCGgCGGCC-------GCGUCGCCGUCgCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.