miRNA display CGI


Results 1 - 20 of 679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 5' -65 NC_003521.1 + 110834 1.1 0.000811
Target:  5'- gCCGCCGCCGGCGCAGCGGCAGCGACGg -3'
miRNA:   3'- -GGCGGCGGCCGCGUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 96780 0.9 0.019315
Target:  5'- gUCGCCGCCGGCaGCAGCGGCGGCGcuCGg -3'
miRNA:   3'- -GGCGGCGGCCG-CGUCGCCGUCGCu-GC- -5'
14140 5' -65 NC_003521.1 + 164527 0.88 0.027116
Target:  5'- uCCGCUGCCGGacccggacucgcaGCAGCGGCAGCGACu -3'
miRNA:   3'- -GGCGGCGGCCg------------CGUCGCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 84738 0.88 0.029436
Target:  5'- aCUGCCGUCgucgucuugcucgGGCGCGGCGGCGGCGACGu -3'
miRNA:   3'- -GGCGGCGG-------------CCGCGUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 90128 0.87 0.033245
Target:  5'- gUCGCCGCCGGCGCAGCagcagcccagcaGCAGCGGCGc -3'
miRNA:   3'- -GGCGGCGGCCGCGUCGc-----------CGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 43560 0.87 0.034165
Target:  5'- cCCGCCGCCGGCGCcgcgucaAGCaccgcuccucgGGCGGCGACGa -3'
miRNA:   3'- -GGCGGCGGCCGCG-------UCG-----------CCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 166653 0.86 0.036893
Target:  5'- gCGCCG-CGGCGCAGCGGCcAGCGGCa -3'
miRNA:   3'- gGCGGCgGCCGCGUCGCCG-UCGCUGc -5'
14140 5' -65 NC_003521.1 + 31276 0.85 0.043863
Target:  5'- gUCGCCGCCaccccgccgGGCGCAuaaccGCGGCAGCGGCGa -3'
miRNA:   3'- -GGCGGCGG---------CCGCGU-----CGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 123634 0.85 0.044958
Target:  5'- aCCGCC-UCGG-GCGGCGGCAGCGACGg -3'
miRNA:   3'- -GGCGGcGGCCgCGUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 92011 0.84 0.050848
Target:  5'- -aGCgGCgaGGCGCGGCGGCGGCGGCGg -3'
miRNA:   3'- ggCGgCGg-CCGCGUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 209533 0.84 0.057065
Target:  5'- gCCGCUGCCgcgguuaugcgcccGGCGgGGUGGCGGCGACGg -3'
miRNA:   3'- -GGCGGCGG--------------CCGCgUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 73131 0.82 0.068207
Target:  5'- gUGCUGCaCGGCggggGCAGCGGCGGCGGCGc -3'
miRNA:   3'- gGCGGCG-GCCG----CGUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 105594 0.82 0.071608
Target:  5'- gCCGCCGCCGGCGCAGCcGCucaGGCGc -3'
miRNA:   3'- -GGCGGCGGCCGCGUCGcCGucgCUGC- -5'
14140 5' -65 NC_003521.1 + 104145 0.82 0.075172
Target:  5'- cCCGCCcuGCuCGGUGCucuGCGGCGGCGGCGc -3'
miRNA:   3'- -GGCGG--CG-GCCGCGu--CGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 111933 0.82 0.075172
Target:  5'- aCGCCGCCcucgacuaccuGGCGCGGCGGCAG-GAUGa -3'
miRNA:   3'- gGCGGCGG-----------CCGCGUCGCCGUCgCUGC- -5'
14140 5' -65 NC_003521.1 + 166209 0.82 0.077018
Target:  5'- cCCGCUGuuGGCGCGGCGGCgaGGCG-CGc -3'
miRNA:   3'- -GGCGGCggCCGCGUCGCCG--UCGCuGC- -5'
14140 5' -65 NC_003521.1 + 142658 0.81 0.080839
Target:  5'- -aGCgGUCGGCGCAGCGccgucaGCAGCGACGg -3'
miRNA:   3'- ggCGgCGGCCGCGUCGC------CGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 161216 0.81 0.080839
Target:  5'- gUCGCC-CCGGCaaguucgaugGCGGCGGCAGCGGCa -3'
miRNA:   3'- -GGCGGcGGCCG----------CGUCGCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 113828 0.81 0.089032
Target:  5'- aCCGCCacGUCGG-GCAGCGGCAGCGggGCGg -3'
miRNA:   3'- -GGCGG--CGGCCgCGUCGCCGUCGC--UGC- -5'
14140 5' -65 NC_003521.1 + 214806 0.81 0.0912
Target:  5'- aCCGCCGUCgGGCGCcgGGC-GCGGCGACGg -3'
miRNA:   3'- -GGCGGCGG-CCGCG--UCGcCGUCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.