miRNA display CGI


Results 1 - 20 of 679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 5' -65 NC_003521.1 + 74686 0.78 0.136588
Target:  5'- aCCGCaagcagcagcgaCGgCGGCGCcGCGGCAGCGGCu -3'
miRNA:   3'- -GGCG------------GCgGCCGCGuCGCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 68507 0.79 0.109651
Target:  5'- uCCGCCGCgaccggccUGGCGCcaccgacaccggacGGCGGCAGCGGCc -3'
miRNA:   3'- -GGCGGCG--------GCCGCG--------------UCGCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 153105 0.79 0.110436
Target:  5'- aCGCCGCCgGGCGCGcgcGaCGGCAGCaGGCGg -3'
miRNA:   3'- gGCGGCGG-CCGCGU---C-GCCGUCG-CUGC- -5'
14140 5' -65 NC_003521.1 + 36060 0.79 0.113093
Target:  5'- cCCGCCGCCGacacaacaGgGCGGCGGCGGCGcCu -3'
miRNA:   3'- -GGCGGCGGC--------CgCGUCGCCGUCGCuGc -5'
14140 5' -65 NC_003521.1 + 127221 0.79 0.121425
Target:  5'- gUCGUCGCUGGCGCGGUGGUccuccacgaagAGCGGCu -3'
miRNA:   3'- -GGCGGCGGCCGCGUCGCCG-----------UCGCUGc -5'
14140 5' -65 NC_003521.1 + 142291 0.79 0.121425
Target:  5'- cCCGCCGCCGcUGCAGCGGCccAGCcGCGc -3'
miRNA:   3'- -GGCGGCGGCcGCGUCGCCG--UCGcUGC- -5'
14140 5' -65 NC_003521.1 + 168538 0.79 0.124327
Target:  5'- -gGCgGCCaGCGCGGCGGCGGCGcugGCGg -3'
miRNA:   3'- ggCGgCGGcCGCGUCGCCGUCGC---UGC- -5'
14140 5' -65 NC_003521.1 + 117766 0.79 0.124327
Target:  5'- gCCGCCGCCGucccaGCAGCauGGUGGCGGCGg -3'
miRNA:   3'- -GGCGGCGGCcg---CGUCG--CCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 105082 0.78 0.130325
Target:  5'- aCCGCCGCCaccacCGCAGUaGCAGCGGCGa -3'
miRNA:   3'- -GGCGGCGGcc---GCGUCGcCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 145894 0.8 0.102814
Target:  5'- -gGCCGCCGGCgGCGG-GaGCAGCGGCGg -3'
miRNA:   3'- ggCGGCGGCCG-CGUCgC-CGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 18724 0.8 0.095688
Target:  5'- gCUGCCGCUGGCggcggcgaucGUGGCGGCGGUGGCGc -3'
miRNA:   3'- -GGCGGCGGCCG----------CGUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 214806 0.81 0.0912
Target:  5'- aCCGCCGUCgGGCGCcgGGC-GCGGCGACGg -3'
miRNA:   3'- -GGCGGCGG-CCGCG--UCGcCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 164527 0.88 0.027116
Target:  5'- uCCGCUGCCGGacccggacucgcaGCAGCGGCAGCGACu -3'
miRNA:   3'- -GGCGGCGGCCg------------CGUCGCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 43560 0.87 0.034165
Target:  5'- cCCGCCGCCGGCGCcgcgucaAGCaccgcuccucgGGCGGCGACGa -3'
miRNA:   3'- -GGCGGCGGCCGCG-------UCG-----------CCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 92011 0.84 0.050848
Target:  5'- -aGCgGCgaGGCGCGGCGGCGGCGGCGg -3'
miRNA:   3'- ggCGgCGg-CCGCGUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 209533 0.84 0.057065
Target:  5'- gCCGCUGCCgcgguuaugcgcccGGCGgGGUGGCGGCGACGg -3'
miRNA:   3'- -GGCGGCGG--------------CCGCgUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 73131 0.82 0.068207
Target:  5'- gUGCUGCaCGGCggggGCAGCGGCGGCGGCGc -3'
miRNA:   3'- gGCGGCG-GCCG----CGUCGCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 105594 0.82 0.071608
Target:  5'- gCCGCCGCCGGCGCAGCcGCucaGGCGc -3'
miRNA:   3'- -GGCGGCGGCCGCGUCGcCGucgCUGC- -5'
14140 5' -65 NC_003521.1 + 111933 0.82 0.075172
Target:  5'- aCGCCGCCcucgacuaccuGGCGCGGCGGCAG-GAUGa -3'
miRNA:   3'- gGCGGCGG-----------CCGCGUCGCCGUCgCUGC- -5'
14140 5' -65 NC_003521.1 + 142658 0.81 0.080839
Target:  5'- -aGCgGUCGGCGCAGCGccgucaGCAGCGACGg -3'
miRNA:   3'- ggCGgCGGCCGCGUCGC------CGUCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.