miRNA display CGI


Results 1 - 20 of 679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 5' -65 NC_003521.1 + 31823 0.66 0.622727
Target:  5'- gCGCCGUCucggcccgGGCGCcgaaGGUGGCguugaagaagacGGCGGCGc -3'
miRNA:   3'- gGCGGCGG--------CCGCG----UCGCCG------------UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 207054 0.66 0.63201
Target:  5'- gCCGCagGCCGGaggcguuGCAG-GGCAGgaGACGg -3'
miRNA:   3'- -GGCGg-CGGCCg------CGUCgCCGUCg-CUGC- -5'
14140 5' -65 NC_003521.1 + 57368 0.66 0.622727
Target:  5'- aCCGCCGCCGugacGCGcCAG-GGCGuCGAUc -3'
miRNA:   3'- -GGCGGCGGC----CGC-GUCgCCGUcGCUGc -5'
14140 5' -65 NC_003521.1 + 131202 0.66 0.621799
Target:  5'- cCCGCUacggcgagagggGCCGGCGCcagagacAGCGuC-GCGACGg -3'
miRNA:   3'- -GGCGG------------CGGCCGCG-------UCGCcGuCGCUGC- -5'
14140 5' -65 NC_003521.1 + 70313 0.66 0.622727
Target:  5'- -gGUCGCCca-GCAGCgaGGCGGUGACGc -3'
miRNA:   3'- ggCGGCGGccgCGUCG--CCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 129833 0.66 0.62644
Target:  5'- cCUGCUGCUGGgGCccGUGGCcgugcccugcuacuGCGACGa -3'
miRNA:   3'- -GGCGGCGGCCgCGu-CGCCGu-------------CGCUGC- -5'
14140 5' -65 NC_003521.1 + 54999 0.66 0.63201
Target:  5'- -gGCCGaCUuguagggcuuaaGGCGCAGCGcCAGCGuCGg -3'
miRNA:   3'- ggCGGC-GG------------CCGCGUCGCcGUCGCuGC- -5'
14140 5' -65 NC_003521.1 + 42945 0.66 0.63201
Target:  5'- uCCGCUGCCGccugcaGCcCAGCGaGC-GCGACc -3'
miRNA:   3'- -GGCGGCGGC------CGcGUCGC-CGuCGCUGc -5'
14140 5' -65 NC_003521.1 + 144299 0.66 0.622727
Target:  5'- gCUGCUGCCGcacGCGCuGCGGUu-CGugGa -3'
miRNA:   3'- -GGCGGCGGC---CGCGuCGCCGucGCugC- -5'
14140 5' -65 NC_003521.1 + 129064 0.66 0.672774
Target:  5'- gCGCCcuugaGCUGGCGCAGacccuCGGCguacugcaggcugugGGUGGCGu -3'
miRNA:   3'- gGCGG-----CGGCCGCGUC-----GCCG---------------UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 28838 0.66 0.622727
Target:  5'- gCGgCGCCuGGacgacgaGCuGCGGCGGCG-CGg -3'
miRNA:   3'- gGCgGCGG-CCg------CGuCGCCGUCGCuGC- -5'
14140 5' -65 NC_003521.1 + 209200 0.66 0.622727
Target:  5'- cCCaCCGUCGGcCGCGGUGGCccugccAGCuGACc -3'
miRNA:   3'- -GGcGGCGGCC-GCGUCGCCG------UCG-CUGc -5'
14140 5' -65 NC_003521.1 + 101711 0.66 0.622727
Target:  5'- aCGCUcaGCaCGauGCGCGGCGGgGGCGAg- -3'
miRNA:   3'- gGCGG--CG-GC--CGCGUCGCCgUCGCUgc -5'
14140 5' -65 NC_003521.1 + 24425 0.66 0.622727
Target:  5'- -aGCCagaCGGCGCAGgGGcCGGCGGg- -3'
miRNA:   3'- ggCGGcg-GCCGCGUCgCC-GUCGCUgc -5'
14140 5' -65 NC_003521.1 + 239662 0.66 0.622727
Target:  5'- cCCGuaGgCGGCGCcGUGGCucccGGgGACGg -3'
miRNA:   3'- -GGCggCgGCCGCGuCGCCG----UCgCUGC- -5'
14140 5' -65 NC_003521.1 + 71263 0.66 0.622727
Target:  5'- cCCGCCaacaUCGGCGgaGGCGGgGGCcGCGg -3'
miRNA:   3'- -GGCGGc---GGCCGCg-UCGCCgUCGcUGC- -5'
14140 5' -65 NC_003521.1 + 1447 0.66 0.622727
Target:  5'- aCGCCGCCuaGCaacCAGCGGacaaGGgGACGg -3'
miRNA:   3'- gGCGGCGGc-CGc--GUCGCCg---UCgCUGC- -5'
14140 5' -65 NC_003521.1 + 141111 0.66 0.63201
Target:  5'- aCUGCgGCCcGCGCAGCuucuGCGcccGCGACa -3'
miRNA:   3'- -GGCGgCGGcCGCGUCGc---CGU---CGCUGc -5'
14140 5' -65 NC_003521.1 + 58979 0.66 0.629225
Target:  5'- gCGCCGUcaggcacuggugguCGGCGUGGUagaGGUAGCGAa- -3'
miRNA:   3'- gGCGGCG--------------GCCGCGUCG---CCGUCGCUgc -5'
14140 5' -65 NC_003521.1 + 117467 0.66 0.622727
Target:  5'- cCCGCCGCCuccuccacacccGGCGacgggccugucCGGCGG-GGCGuACGg -3'
miRNA:   3'- -GGCGGCGG------------CCGC-----------GUCGCCgUCGC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.