miRNA display CGI


Results 21 - 40 of 252 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 35085 0.66 0.812399
Target:  5'- gGGCGcUCGacaUGCCGGAUucgAGGCGGCCc -3'
miRNA:   3'- gUCGU-AGUc--GCGGUCUG---UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 150769 0.66 0.777788
Target:  5'- -cGCGUguGCGCUcgcgcgacgacGGGCGGGCGcgaGCCGc -3'
miRNA:   3'- guCGUAguCGCGG-----------UCUGUCCGC---CGGU- -5'
14147 5' -60.2 NC_003521.1 + 128480 0.66 0.812399
Target:  5'- gGGCAgCGGCGUgAGGCuGuGCGcGCCGg -3'
miRNA:   3'- gUCGUaGUCGCGgUCUGuC-CGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 65775 0.66 0.803953
Target:  5'- -cGCAUCAcaccGcCGCCGGACAacuucGGCcGGCCc -3'
miRNA:   3'- guCGUAGU----C-GCGGUCUGU-----CCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 27013 0.66 0.807349
Target:  5'- aCGGCAUCgaaaccgaggcuccaGGCGCgGcGCAGG-GGCCGa -3'
miRNA:   3'- -GUCGUAG---------------UCGCGgUcUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 120064 0.66 0.786639
Target:  5'- cCAGUggCAG-GCCGGcaucCAGGCGcGCCAc -3'
miRNA:   3'- -GUCGuaGUCgCGGUCu---GUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 71 0.66 0.777788
Target:  5'- -cGCggCGGCGUgcGGCGGGCcGGCCGg -3'
miRNA:   3'- guCGuaGUCGCGguCUGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 111031 0.66 0.786639
Target:  5'- aCGGCuUCAGCGCCc--CAGGCGaCCc -3'
miRNA:   3'- -GUCGuAGUCGCGGucuGUCCGCcGGu -5'
14147 5' -60.2 NC_003521.1 + 40900 0.66 0.803953
Target:  5'- gGGgGUCAGUuuaauaGCgAGGCggGGGCGGCCc -3'
miRNA:   3'- gUCgUAGUCG------CGgUCUG--UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 168548 0.66 0.80988
Target:  5'- gCGGCggCGGCGCUGGcgggcugcggguaaGguGGCGGCUg -3'
miRNA:   3'- -GUCGuaGUCGCGGUC--------------UguCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 191016 0.66 0.803953
Target:  5'- -uGCA-CGGCGcCCAGccauuCGGGCGGCa- -3'
miRNA:   3'- guCGUaGUCGC-GGUCu----GUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 240620 0.66 0.777788
Target:  5'- -cGCggCGGCGUgcGGCGGGCcGGCCGg -3'
miRNA:   3'- guCGuaGUCGCGguCUGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 84676 0.66 0.823969
Target:  5'- -cGCAgCAGCGCCAGcaGCugcgugcacaccuccAGGCcGGCCu -3'
miRNA:   3'- guCGUaGUCGCGGUC--UG---------------UCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 99411 0.66 0.803953
Target:  5'- gCAGCGUCuGCucGUCgaagGGACAGuaGGCCAg -3'
miRNA:   3'- -GUCGUAGuCG--CGG----UCUGUCcgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 164436 0.66 0.795364
Target:  5'- -uGCuagCAGCGCCAccGCGGccGCGGCCGu -3'
miRNA:   3'- guCGua-GUCGCGGUc-UGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 206160 0.66 0.803953
Target:  5'- aGGCcUCcgagaAGC-CCAGGagcaGGGCGGCCAg -3'
miRNA:   3'- gUCGuAG-----UCGcGGUCUg---UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 145258 0.66 0.786639
Target:  5'- -uGCAg-GGCGCCuccucGGCcucGGCGGCCAg -3'
miRNA:   3'- guCGUagUCGCGGu----CUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 110318 0.66 0.777788
Target:  5'- gCAGCcgCAGgGCCAucauGAC--GCGGCCGc -3'
miRNA:   3'- -GUCGuaGUCgCGGU----CUGucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 87785 0.66 0.777788
Target:  5'- gGGCcgCcuCGUCGGucuCGGGCGGCCu -3'
miRNA:   3'- gUCGuaGucGCGGUCu--GUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 99449 0.66 0.795364
Target:  5'- aAGCGguagGGCGCCAGACAGcGCuGGauCCGg -3'
miRNA:   3'- gUCGUag--UCGCGGUCUGUC-CG-CC--GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.