miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 127846 0.66 0.777788
Target:  5'- cCGGCGcCAGCccGUCGGGCAGGuuGCCc -3'
miRNA:   3'- -GUCGUaGUCG--CGGUCUGUCCgcCGGu -5'
14147 5' -60.2 NC_003521.1 + 148429 0.66 0.8031
Target:  5'- gGGCggCcGCGCCGGcggcuccAgGGGUGGCCGg -3'
miRNA:   3'- gUCGuaGuCGCGGUC-------UgUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 164436 0.66 0.795364
Target:  5'- -uGCuagCAGCGCCAccGCGGccGCGGCCGu -3'
miRNA:   3'- guCGua-GUCGCGGUc-UGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 200299 0.66 0.777788
Target:  5'- -cGCggCGGCGUgcGGCGGGCcGGCCGg -3'
miRNA:   3'- guCGuaGUCGCGguCUGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 168399 0.66 0.777788
Target:  5'- uGGCGUUGcCGCCguugguggcuaGGGCGGGCGGCa- -3'
miRNA:   3'- gUCGUAGUcGCGG-----------UCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 133368 0.66 0.777788
Target:  5'- uCAGCA-CGGUccGCCGGcACAGcGCGGCg- -3'
miRNA:   3'- -GUCGUaGUCG--CGGUC-UGUC-CGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 24415 0.66 0.786639
Target:  5'- gAGCA-UAGaaaGCCAGACGGcGCaggGGCCGg -3'
miRNA:   3'- gUCGUaGUCg--CGGUCUGUC-CG---CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 121145 0.66 0.786639
Target:  5'- gCAGCAUgAGCauGUCgcggucgaagaAGAagaGGGCGGCCAg -3'
miRNA:   3'- -GUCGUAgUCG--CGG-----------UCUg--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 40900 0.66 0.803953
Target:  5'- gGGgGUCAGUuuaauaGCgAGGCggGGGCGGCCc -3'
miRNA:   3'- gUCgUAGUCG------CGgUCUG--UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 165667 0.66 0.777788
Target:  5'- gCGGCAcCAuGCGuCCAGGCauccccAGGuCGGCCGc -3'
miRNA:   3'- -GUCGUaGU-CGC-GGUCUG------UCC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 99449 0.66 0.795364
Target:  5'- aAGCGguagGGCGCCAGACAGcGCuGGauCCGg -3'
miRNA:   3'- gUCGUag--UCGCGGUCUGUC-CG-CC--GGU- -5'
14147 5' -60.2 NC_003521.1 + 155645 0.66 0.777788
Target:  5'- gUAGCAgaAGCGCCGugcuGGguGGCGGCgGa -3'
miRNA:   3'- -GUCGUagUCGCGGU----CUguCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 70234 0.66 0.786639
Target:  5'- -cGCAgCAGgGCUAGGCAgGGCGaGCUg -3'
miRNA:   3'- guCGUaGUCgCGGUCUGU-CCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 111031 0.66 0.786639
Target:  5'- aCGGCuUCAGCGCCc--CAGGCGaCCc -3'
miRNA:   3'- -GUCGuAGUCGCGGucuGUCCGCcGGu -5'
14147 5' -60.2 NC_003521.1 + 201278 0.66 0.777788
Target:  5'- cCGGCGUCGGgGCCAccGACcuGC-GCCAg -3'
miRNA:   3'- -GUCGUAGUCgCGGU--CUGucCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 61611 0.66 0.777788
Target:  5'- gGGCG-CAGCGCUccaacGGACGGGUGaucGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG-----UCUGUCCGC---CGGu -5'
14147 5' -60.2 NC_003521.1 + 37802 0.66 0.777788
Target:  5'- cCGGCuAUCAcCGCCGaacccgucuuGGCGGGCGaGCCGc -3'
miRNA:   3'- -GUCG-UAGUcGCGGU----------CUGUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 58476 0.66 0.794497
Target:  5'- cCAGgGUCugccaauGGC-CCAGACAGGUGGUg- -3'
miRNA:   3'- -GUCgUAG-------UCGcGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 55642 0.66 0.795364
Target:  5'- gGGCGUCA-CGCUccACAGGUGcGCCAc -3'
miRNA:   3'- gUCGUAGUcGCGGucUGUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 145258 0.66 0.786639
Target:  5'- -uGCAg-GGCGCCuccucGGCcucGGCGGCCAg -3'
miRNA:   3'- guCGUagUCGCGGu----CUGu--CCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.