miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 107004 1.07 0.002243
Target:  5'- uCAGCAUCAGCGCCAGACAGGCGGCCAc -3'
miRNA:   3'- -GUCGUAGUCGCGGUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 192171 0.77 0.255965
Target:  5'- gCGGUGUCAGCGCCGGuc--GCGGCCAc -3'
miRNA:   3'- -GUCGUAGUCGCGGUCugucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 137002 0.76 0.272826
Target:  5'- uCGGCAUCAGCGCgAGcuggccgaggccCGGGCGGUCAa -3'
miRNA:   3'- -GUCGUAGUCGCGgUCu-----------GUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 103218 0.76 0.293174
Target:  5'- aGGCGUcCAGCGCgCGGuACAGGuCGGCCu -3'
miRNA:   3'- gUCGUA-GUCGCG-GUC-UGUCC-GCCGGu -5'
14147 5' -60.2 NC_003521.1 + 95718 0.76 0.293174
Target:  5'- cCGGUAguuaGGCGCCAGguccaGCAGGCGGCUg -3'
miRNA:   3'- -GUCGUag--UCGCGGUC-----UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 33632 0.75 0.313308
Target:  5'- cCAGCAaCAG-GCCguGGAgGGGCGGCCAg -3'
miRNA:   3'- -GUCGUaGUCgCGG--UCUgUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 101183 0.75 0.320249
Target:  5'- aCGGCGUCcGCGCCcGGCGGGCGGaUCu -3'
miRNA:   3'- -GUCGUAGuCGCGGuCUGUCCGCC-GGu -5'
14147 5' -60.2 NC_003521.1 + 217332 0.75 0.327304
Target:  5'- uCAGCA-CGGUGgCGGAC-GGCGGCCGg -3'
miRNA:   3'- -GUCGUaGUCGCgGUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 236491 0.74 0.364289
Target:  5'- gCGGCggUGGCGCCAGGCAuGGaCGGUCGa -3'
miRNA:   3'- -GUCGuaGUCGCGGUCUGU-CC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 23091 0.74 0.372025
Target:  5'- -uGCGUCcGUgGCCGGGCGGGgGGCCGg -3'
miRNA:   3'- guCGUAGuCG-CGGUCUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 132603 0.73 0.387028
Target:  5'- gCGGCGUCGGCGuccgcaacggcuuCCAGACucGGCGGCg- -3'
miRNA:   3'- -GUCGUAGUCGC-------------GGUCUGu-CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 216979 0.73 0.387829
Target:  5'- gAGaCA-CAGCGCCAG-CAGGuCGGCCu -3'
miRNA:   3'- gUC-GUaGUCGCGGUCuGUCC-GCCGGu -5'
14147 5' -60.2 NC_003521.1 + 153598 0.73 0.391042
Target:  5'- gCAGCAgCAGCGCCAGGuuGGCGcucagcagcuccugcGCCAg -3'
miRNA:   3'- -GUCGUaGUCGCGGUCUguCCGC---------------CGGU- -5'
14147 5' -60.2 NC_003521.1 + 55719 0.73 0.403245
Target:  5'- cCAGCAugUCGGCGCgCAGcgccucccagcgcGCGGGCGGCa- -3'
miRNA:   3'- -GUCGU--AGUCGCG-GUC-------------UGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 115653 0.73 0.404067
Target:  5'- -cGUGUCGGCGCCccaguGGCgggugaagaAGGCGGCCAg -3'
miRNA:   3'- guCGUAGUCGCGGu----CUG---------UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 75034 0.73 0.412346
Target:  5'- -uGCGacggCAGCGCCAG-CGGGCuGGCCu -3'
miRNA:   3'- guCGUa---GUCGCGGUCuGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 102967 0.73 0.412346
Target:  5'- gGGCGUCGGgGCuCuGGCgGGGCGGCCc -3'
miRNA:   3'- gUCGUAGUCgCG-GuCUG-UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 106295 0.73 0.420729
Target:  5'- gGGCAaCAGCaaCCAGGC-GGCGGCCGu -3'
miRNA:   3'- gUCGUaGUCGc-GGUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 220939 0.73 0.429214
Target:  5'- gCAGCAggaUCAGCGCC-GAC--GCGGCCGu -3'
miRNA:   3'- -GUCGU---AGUCGCGGuCUGucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 214339 0.72 0.436936
Target:  5'- -cGCAUC-GCGCCAGagagcgcGCAGGCGGUg- -3'
miRNA:   3'- guCGUAGuCGCGGUC-------UGUCCGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.