Results 1 - 20 of 252 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 103869 | 0.71 | 0.490346 |
Target: 5'- uGGCgAUCAGCGCCgacagggGGAUGGGCuGCCGc -3' miRNA: 3'- gUCG-UAGUCGCGG-------UCUGUCCGcCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 115834 | 0.72 | 0.437799 |
Target: 5'- uCAGCA--GGCGCuggcuCAGGCGGGCGGCgCAc -3' miRNA: 3'- -GUCGUagUCGCG-----GUCUGUCCGCCG-GU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 55018 | 0.72 | 0.437799 |
Target: 5'- aGGCG-CAGCGCCAG-CGucGGCGGCUc -3' miRNA: 3'- gUCGUaGUCGCGGUCuGU--CCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 138917 | 0.72 | 0.437799 |
Target: 5'- cCGGC-UCGGUGUCGGACcacGGCGGCUg -3' miRNA: 3'- -GUCGuAGUCGCGGUCUGu--CCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 101500 | 0.72 | 0.446482 |
Target: 5'- gAGCAgCGGCgGCCAGAC--GCGGCCGa -3' miRNA: 3'- gUCGUaGUCG-CGGUCUGucCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 45608 | 0.72 | 0.446482 |
Target: 5'- cCAGCAccgacaUCAGCGCCGacGCAGaCGGCCAc -3' miRNA: 3'- -GUCGU------AGUCGCGGUc-UGUCcGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 19665 | 0.72 | 0.467703 |
Target: 5'- aCGGCAggUGGCGCCAgagaccgaggaaucuGACAGGCcaGGCCGg -3' miRNA: 3'- -GUCGUa-GUCGCGGU---------------CUGUCCG--CCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 200576 | 0.72 | 0.473089 |
Target: 5'- aAGCGUgAGCuGCCGGA--GGCGGCCc -3' miRNA: 3'- gUCGUAgUCG-CGGUCUguCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 55828 | 0.72 | 0.482135 |
Target: 5'- cCAGUcgCAGCGC--GGCAGGCcGGCCu -3' miRNA: 3'- -GUCGuaGUCGCGguCUGUCCG-CCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 214339 | 0.72 | 0.436936 |
Target: 5'- -cGCAUC-GCGCCAGagagcgcGCAGGCGGUg- -3' miRNA: 3'- guCGUAGuCGCGGUC-------UGUCCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 220939 | 0.73 | 0.429214 |
Target: 5'- gCAGCAggaUCAGCGCC-GAC--GCGGCCGu -3' miRNA: 3'- -GUCGU---AGUCGCGGuCUGucCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 115653 | 0.73 | 0.404067 |
Target: 5'- -cGUGUCGGCGCCccaguGGCgggugaagaAGGCGGCCAg -3' miRNA: 3'- guCGUAGUCGCGGu----CUG---------UCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 137002 | 0.76 | 0.272826 |
Target: 5'- uCGGCAUCAGCGCgAGcuggccgaggccCGGGCGGUCAa -3' miRNA: 3'- -GUCGUAGUCGCGgUCu-----------GUCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 33632 | 0.75 | 0.313308 |
Target: 5'- cCAGCAaCAG-GCCguGGAgGGGCGGCCAg -3' miRNA: 3'- -GUCGUaGUCgCGG--UCUgUCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 101183 | 0.75 | 0.320249 |
Target: 5'- aCGGCGUCcGCGCCcGGCGGGCGGaUCu -3' miRNA: 3'- -GUCGUAGuCGCGGuCUGUCCGCC-GGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 217332 | 0.75 | 0.327304 |
Target: 5'- uCAGCA-CGGUGgCGGAC-GGCGGCCGg -3' miRNA: 3'- -GUCGUaGUCGCgGUCUGuCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 132603 | 0.73 | 0.387028 |
Target: 5'- gCGGCGUCGGCGuccgcaacggcuuCCAGACucGGCGGCg- -3' miRNA: 3'- -GUCGUAGUCGC-------------GGUCUGu-CCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 216979 | 0.73 | 0.387829 |
Target: 5'- gAGaCA-CAGCGCCAG-CAGGuCGGCCu -3' miRNA: 3'- gUC-GUaGUCGCGGUCuGUCC-GCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 153598 | 0.73 | 0.391042 |
Target: 5'- gCAGCAgCAGCGCCAGGuuGGCGcucagcagcuccugcGCCAg -3' miRNA: 3'- -GUCGUaGUCGCGGUCUguCCGC---------------CGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 55719 | 0.73 | 0.403245 |
Target: 5'- cCAGCAugUCGGCGCgCAGcgccucccagcgcGCGGGCGGCa- -3' miRNA: 3'- -GUCGU--AGUCGCG-GUC-------------UGUCCGCCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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