miRNA display CGI


Results 1 - 20 of 252 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 71 0.66 0.777788
Target:  5'- -cGCggCGGCGUgcGGCGGGCcGGCCGg -3'
miRNA:   3'- guCGuaGUCGCGguCUGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 348 0.68 0.703334
Target:  5'- aAGCGUgAGCuGCCGGA--GGCGGCg- -3'
miRNA:   3'- gUCGUAgUCG-CGGUCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 1050 0.66 0.777788
Target:  5'- cCGGCGUCGGgGCCAccGACcuGC-GCCAg -3'
miRNA:   3'- -GUCGUAGUCgCGGU--CUGucCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 7820 0.69 0.625324
Target:  5'- aCGGCGUCaaggccauccGGCGCCAGAagacgaggGGGUGGCgGa -3'
miRNA:   3'- -GUCGUAG----------UCGCGGUCUg-------UCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 10020 0.67 0.741261
Target:  5'- gCAGCcgCAGCaGCguGACcauugucaaGGGCGGCa- -3'
miRNA:   3'- -GUCGuaGUCG-CGguCUG---------UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 13851 0.69 0.634154
Target:  5'- uGGC-UCGGCGCgGGggucucuGCGGGCGGCg- -3'
miRNA:   3'- gUCGuAGUCGCGgUC-------UGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 14732 0.69 0.625324
Target:  5'- uGGUAUCuguuGgGCguGACGGGCcGGCCGc -3'
miRNA:   3'- gUCGUAGu---CgCGguCUGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 16999 0.67 0.72244
Target:  5'- aCAGCA--GGCGCCcgcGGugGcGGCGGCgCAg -3'
miRNA:   3'- -GUCGUagUCGCGG---UCugU-CCGCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 17052 0.69 0.644943
Target:  5'- gCAGCAccagCAGCGCC-GACGauaccgcuGGCGGCg- -3'
miRNA:   3'- -GUCGUa---GUCGCGGuCUGU--------CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 17172 0.66 0.811561
Target:  5'- aGGCG-CAGCGCUggcagcuGGGCAGGCGcaucguggacGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG-------UCUGUCCGC----------CGGu -5'
14147 5' -60.2 NC_003521.1 + 18079 0.67 0.731891
Target:  5'- uGGCcgUAGC-CCAGACGGcgcgcgagaugaGCGGCCu -3'
miRNA:   3'- gUCGuaGUCGcGGUCUGUC------------CGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 19665 0.72 0.467703
Target:  5'- aCGGCAggUGGCGCCAgagaccgaggaaucuGACAGGCcaGGCCGg -3'
miRNA:   3'- -GUCGUa-GUCGCGGU---------------CUGUCCG--CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 23091 0.74 0.372025
Target:  5'- -uGCGUCcGUgGCCGGGCGGGgGGCCGg -3'
miRNA:   3'- guCGUAGuCG-CGGUCUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 24223 0.67 0.750544
Target:  5'- gCAGCAcCAGCGgguugggCAG-CGGGCGGUCGg -3'
miRNA:   3'- -GUCGUaGUCGCg------GUCuGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 24415 0.66 0.786639
Target:  5'- gAGCA-UAGaaaGCCAGACGGcGCaggGGCCGg -3'
miRNA:   3'- gUCGUaGUCg--CGGUCUGUC-CG---CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 25546 0.66 0.803953
Target:  5'- gAGCGacggCGGaCGCUGuuguGCAGGCGGCCGc -3'
miRNA:   3'- gUCGUa---GUC-GCGGUc---UGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 27013 0.66 0.807349
Target:  5'- aCGGCAUCgaaaccgaggcuccaGGCGCgGcGCAGG-GGCCGa -3'
miRNA:   3'- -GUCGUAG---------------UCGCGgUcUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 27366 0.67 0.741261
Target:  5'- gAGCAccaGGCuCCAGcCGGGgGGCCAg -3'
miRNA:   3'- gUCGUag-UCGcGGUCuGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 27457 0.69 0.654741
Target:  5'- uCGGcCGUgAGCGCCAGGCuGGCcaGGuCCGu -3'
miRNA:   3'- -GUC-GUAgUCGCGGUCUGuCCG--CC-GGU- -5'
14147 5' -60.2 NC_003521.1 + 28060 0.7 0.580362
Target:  5'- aCGGCAUCgucaccuucaugagcAGCGCCAcGuuGGUGGCCAc -3'
miRNA:   3'- -GUCGUAG---------------UCGCGGUcUguCCGCCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.