miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 29728 0.66 0.803953
Target:  5'- gAGCcUCGGCGCgaCGGACAGGCaGGa-- -3'
miRNA:   3'- gUCGuAGUCGCG--GUCUGUCCG-CCggu -5'
14147 5' -60.2 NC_003521.1 + 30095 0.68 0.703334
Target:  5'- aCGGUAgCAGCGCCgaGGGCuGGuuGCCAg -3'
miRNA:   3'- -GUCGUaGUCGCGG--UCUGuCCgcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 30329 0.67 0.731891
Target:  5'- cCAGCAaCuGCGCCAG-CGagucGGCGGCg- -3'
miRNA:   3'- -GUCGUaGuCGCGGUCuGU----CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 31430 0.67 0.737523
Target:  5'- gCAGCAggcggaugaugcgCAGCGCCAG-CAcGGCGuuagaaGCCAg -3'
miRNA:   3'- -GUCGUa------------GUCGCGGUCuGU-CCGC------CGGU- -5'
14147 5' -60.2 NC_003521.1 + 31676 0.68 0.712919
Target:  5'- gCAGC-UCGGCGUUcuccaggugaaAGugGGGCGGCg- -3'
miRNA:   3'- -GUCGuAGUCGCGG-----------UCugUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 31712 0.68 0.693695
Target:  5'- gCAGCAUguGCGCgugcugGGACGccGCGGCCAc -3'
miRNA:   3'- -GUCGUAguCGCGg-----UCUGUc-CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 32091 0.68 0.683037
Target:  5'- aCGGC--CAGCGCCAugcguuuGGCGGcGCGGCUg -3'
miRNA:   3'- -GUCGuaGUCGCGGU-------CUGUC-CGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 33632 0.75 0.313308
Target:  5'- cCAGCAaCAG-GCCguGGAgGGGCGGCCAg -3'
miRNA:   3'- -GUCGUaGUCgCGG--UCUgUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 35085 0.66 0.812399
Target:  5'- gGGCGcUCGacaUGCCGGAUucgAGGCGGCCc -3'
miRNA:   3'- gUCGU-AGUc--GCGGUCUG---UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 36002 0.69 0.625324
Target:  5'- uCAGCGaCGGCGaCGGAgGuGGCGGCCc -3'
miRNA:   3'- -GUCGUaGUCGCgGUCUgU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 36885 0.66 0.795364
Target:  5'- gAGCGagGGCGUCAGGCAGccGUGGUgGa -3'
miRNA:   3'- gUCGUagUCGCGGUCUGUC--CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 37802 0.66 0.777788
Target:  5'- cCGGCuAUCAcCGCCGaacccgucuuGGCGGGCGaGCCGc -3'
miRNA:   3'- -GUCG-UAGUcGCGGU----------CUGUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 38375 0.67 0.750544
Target:  5'- cCAGCAcuagCAGgGCCuGGGCguaGGGCcGGCCGu -3'
miRNA:   3'- -GUCGUa---GUCgCGG-UCUG---UCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 39318 0.69 0.625324
Target:  5'- --uCGUCGGCGUC--GCGGGCGGCUAg -3'
miRNA:   3'- gucGUAGUCGCGGucUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 39588 0.69 0.634154
Target:  5'- cCGGCGUCGGCGguccugcCCuGGguGGCGGCg- -3'
miRNA:   3'- -GUCGUAGUCGC-------GGuCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 39874 0.67 0.731891
Target:  5'- aCGGCgAUCGGgCGCCGuACAGGguguUGGCCGa -3'
miRNA:   3'- -GUCG-UAGUC-GCGGUcUGUCC----GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 40900 0.66 0.803953
Target:  5'- gGGgGUCAGUuuaauaGCgAGGCggGGGCGGCCc -3'
miRNA:   3'- gUCgUAGUCG------CGgUCUG--UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 43417 0.7 0.594973
Target:  5'- uCGGCGUCGugGCCAGACAcccagucccgggcGGCGaGCCAg -3'
miRNA:   3'- -GUCGUAGUcgCGGUCUGU-------------CCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 43476 0.69 0.644943
Target:  5'- cCAGCG-CGGCgGCCGugcuGGCcgcGGCGGCCAa -3'
miRNA:   3'- -GUCGUaGUCG-CGGU----CUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 45608 0.72 0.446482
Target:  5'- cCAGCAccgacaUCAGCGCCGacGCAGaCGGCCAc -3'
miRNA:   3'- -GUCGU------AGUCGCGGUc-UGUCcGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.