miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 64189 0.7 0.905443
Target:  5'- ---aCGCGACUgCGUCaGcAGUACCUGCu -3'
miRNA:   3'- guugGUGCUGGgGUAG-C-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 66615 0.67 0.976427
Target:  5'- cCGACCcgcGCGACCCCAacgugggCGcGUcgcACCUGUc -3'
miRNA:   3'- -GUUGG---UGCUGGGGUa------GCuCA---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 66702 0.7 0.905443
Target:  5'- gGGCUGCGACCCCc-UGAGggUCUGCu -3'
miRNA:   3'- gUUGGUGCUGGGGuaGCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 67290 0.68 0.968069
Target:  5'- aCAGCCGCugcgccuGACgCCCGaCGAGU-UCUGCa -3'
miRNA:   3'- -GUUGGUG-------CUG-GGGUaGCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 68449 0.68 0.968367
Target:  5'- uCAACCGCGugCCggucagCAUCGAcuuUCUGCg -3'
miRNA:   3'- -GUUGGUGCugGG------GUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 68810 0.67 0.980889
Target:  5'- uGAgCAUGGCCaucgaggcggCCAUCGAGgACCUGa -3'
miRNA:   3'- gUUgGUGCUGG----------GGUAGCUCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 71381 0.72 0.825858
Target:  5'- -cACgGCGACCCgCuguUCGAGgaccGCCUGCu -3'
miRNA:   3'- guUGgUGCUGGG-Gu--AGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 73192 0.66 0.990414
Target:  5'- uGGCCGgcaucgacgugacCGACCCC---GAGcGCCUGCg -3'
miRNA:   3'- gUUGGU-------------GCUGGGGuagCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 73727 0.67 0.982867
Target:  5'- gGGCCGCGACCgCuUCGuGcAgCUGCu -3'
miRNA:   3'- gUUGGUGCUGGgGuAGCuCaUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 73951 0.68 0.962011
Target:  5'- gAACCA-GACCagCAcCGuGUGCCUGCu -3'
miRNA:   3'- gUUGGUgCUGGg-GUaGCuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 77430 0.67 0.973929
Target:  5'- gGGCCACGGCCgagaggaugccgCCGUUG-GUGCCcGUg -3'
miRNA:   3'- gUUGGUGCUGG------------GGUAGCuCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 79695 0.69 0.942387
Target:  5'- --cCCGCGGCCgCGUUGAu--CCUGCa -3'
miRNA:   3'- guuGGUGCUGGgGUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 80260 0.67 0.976427
Target:  5'- aAACCACGACCaCCA-CuAGUAUC-GCg -3'
miRNA:   3'- gUUGGUGCUGG-GGUaGcUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 80510 0.66 0.986356
Target:  5'- aCAACgAUGACCCCGggGAGgcgGCa-GCg -3'
miRNA:   3'- -GUUGgUGCUGGGGUagCUCa--UGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 83797 0.68 0.958521
Target:  5'- cCGACCGCG-CCCC--CGAa-ACCUGCu -3'
miRNA:   3'- -GUUGGUGCuGGGGuaGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 83873 0.66 0.987882
Target:  5'- --uCCuCGACCCagucuUCGGGUGCauCUGCg -3'
miRNA:   3'- guuGGuGCUGGGgu---AGCUCAUG--GACG- -5'
14148 3' -53.8 NC_003521.1 + 85493 0.66 0.990535
Target:  5'- --cCCGCGcCCCCGcCGGG-ACCcGCg -3'
miRNA:   3'- guuGGUGCuGGGGUaGCUCaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 85655 0.67 0.973929
Target:  5'- gCAGCCGCGGCCgCCAgcuguucCGA--GCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa------GCUcaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 88315 0.74 0.726193
Target:  5'- --cCCugGACCCCAUCcccGAGgccUAUCUGCa -3'
miRNA:   3'- guuGGugCUGGGGUAG---CUC---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 88887 0.66 0.990535
Target:  5'- -uGCCuguuCGACCUgcUCucGUACCUGCg -3'
miRNA:   3'- guUGGu---GCUGGGguAGcuCAUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.