miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 21768 0.71 0.899255
Target:  5'- -cACCugGGCgCCGUgGcGUGCCUGUc -3'
miRNA:   3'- guUGGugCUGgGGUAgCuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 23945 0.68 0.958521
Target:  5'- -uGCgACGACCUCAUCG-GUcucGCCcGCa -3'
miRNA:   3'- guUGgUGCUGGGGUAGCuCA---UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 25684 0.66 0.987882
Target:  5'- uCGGCCACGaugcaaGCCCCcUCGuggcuGGUACCgaacacGCg -3'
miRNA:   3'- -GUUGGUGC------UGGGGuAGC-----UCAUGGa-----CG- -5'
14148 3' -53.8 NC_003521.1 + 27876 0.68 0.971245
Target:  5'- gGACCuCGACCgCAUgGAGgcggGCUUGUc -3'
miRNA:   3'- gUUGGuGCUGGgGUAgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 28312 0.73 0.817483
Target:  5'- gCGGCaGCGACCCCggCGcg-GCCUGCg -3'
miRNA:   3'- -GUUGgUGCUGGGGuaGCucaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 42972 0.69 0.950896
Target:  5'- gCGACCcgcCGGCgCCCAcCGAcgACCUGCa -3'
miRNA:   3'- -GUUGGu--GCUG-GGGUaGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 43190 0.67 0.973929
Target:  5'- -cACCGCGACCUgugcaacgugcuCAUCG---GCCUGCu -3'
miRNA:   3'- guUGGUGCUGGG------------GUAGCucaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 43494 0.67 0.978744
Target:  5'- uGGCCGCGGCggccaacaUCCGUC-AGcGCCUGCc -3'
miRNA:   3'- gUUGGUGCUG--------GGGUAGcUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 44012 0.71 0.899255
Target:  5'- uCAACCACGGCCugCCcUCGcccaccUACCUGCu -3'
miRNA:   3'- -GUUGGUGCUGG--GGuAGCuc----AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 44147 0.68 0.962011
Target:  5'- aCAGCCGCGACaUCCuggUGG--ACCUGCg -3'
miRNA:   3'- -GUUGGUGCUG-GGGua-GCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 49573 0.72 0.857597
Target:  5'- -uGCCGCuuCCCCGaCGAGUGCCgaggaagGCg -3'
miRNA:   3'- guUGGUGcuGGGGUaGCUCAUGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 52901 0.72 0.857597
Target:  5'- gCGACCAgGACUCUcgCGAGcugcugaucgACCUGCc -3'
miRNA:   3'- -GUUGGUgCUGGGGuaGCUCa---------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 53854 0.72 0.842093
Target:  5'- gCGACgGCGuCCUCGgccggcguguaCGAGUGCCUGCu -3'
miRNA:   3'- -GUUGgUGCuGGGGUa----------GCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 56283 0.69 0.942387
Target:  5'- gGACuCGCaGGCCagCAUCGAGUACUUGa -3'
miRNA:   3'- gUUG-GUG-CUGGg-GUAGCUCAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 59607 0.66 0.986356
Target:  5'- aCGACgGCGAUCggCCAUCGcAGUuCCUGg -3'
miRNA:   3'- -GUUGgUGCUGG--GGUAGC-UCAuGGACg -5'
14148 3' -53.8 NC_003521.1 + 59613 0.67 0.980889
Target:  5'- uGGCgGCGGCCCCggCGGcgACCgcgGCu -3'
miRNA:   3'- gUUGgUGCUGGGGuaGCUcaUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 59896 0.71 0.879375
Target:  5'- -cACCGCG-CCaCCAUCGAGcgGCC-GCa -3'
miRNA:   3'- guUGGUGCuGG-GGUAGCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 60617 0.67 0.973929
Target:  5'- -cACCACcaACgCCGagcgCGAGUACCUGUa -3'
miRNA:   3'- guUGGUGc-UGgGGUa---GCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 63068 0.74 0.754788
Target:  5'- aCGACCGCGACCCCGUacagcuGcGCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGGGGUAgcu---CaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 63654 0.67 0.980889
Target:  5'- gCAACCcCGugCCCGugaaccagagcuUCGuGUGUCUGCg -3'
miRNA:   3'- -GUUGGuGCugGGGU------------AGCuCAUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.