miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 146782 0.66 0.984687
Target:  5'- cCGGCCugGacagaaggcggGCCCCggCGAGcUAUgUGCg -3'
miRNA:   3'- -GUUGGugC-----------UGGGGuaGCUC-AUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 233931 0.66 0.986356
Target:  5'- --cCCGCG-CCCCAggcCGAGUAgaUGCc -3'
miRNA:   3'- guuGGUGCuGGGGUa--GCUCAUggACG- -5'
14148 3' -53.8 NC_003521.1 + 213433 0.66 0.988454
Target:  5'- aCAACCACGAgauCCCCGUgGccuggccccccggcuGGaGCCUGg -3'
miRNA:   3'- -GUUGGUGCU---GGGGUAgC---------------UCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 137666 0.66 0.987882
Target:  5'- --uCCACGACUaCGUgGAGacgcGCCUGCu -3'
miRNA:   3'- guuGGUGCUGGgGUAgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 134721 0.66 0.987882
Target:  5'- -cGCCACG-CCCUgccCGAGgcCUUGCg -3'
miRNA:   3'- guUGGUGCuGGGGua-GCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 231262 0.66 0.987882
Target:  5'- uCAAUCACGACUCgCuggCGAGUguGCCUuGUa -3'
miRNA:   3'- -GUUGGUGCUGGG-Gua-GCUCA--UGGA-CG- -5'
14148 3' -53.8 NC_003521.1 + 113045 0.66 0.989272
Target:  5'- gCGGCUACGGCCgCCGcccgacuaCGAGgagACgCUGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa-------GCUCa--UG-GACG- -5'
14148 3' -53.8 NC_003521.1 + 232200 0.66 0.989272
Target:  5'- -cGCCAUgGGCCCCcgCGGGUGgUggugGCu -3'
miRNA:   3'- guUGGUG-CUGGGGuaGCUCAUgGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 1164 0.66 0.984687
Target:  5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3'
miRNA:   3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 193317 0.66 0.987882
Target:  5'- uCAGCUACGGCUgCAUCGcGGU-CCggGCc -3'
miRNA:   3'- -GUUGGUGCUGGgGUAGC-UCAuGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 207286 0.66 0.984687
Target:  5'- cCGGCCGCcuuuacuucaucGGCCUCAUCagugucuauGAGUGCgUGCc -3'
miRNA:   3'- -GUUGGUG------------CUGGGGUAG---------CUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 157806 0.66 0.988454
Target:  5'- gGACCGCGAUCUCAUCcucacguauaacaaaGAGUgGCCauuauUGCu -3'
miRNA:   3'- gUUGGUGCUGGGGUAG---------------CUCA-UGG-----ACG- -5'
14148 3' -53.8 NC_003521.1 + 204987 0.66 0.987882
Target:  5'- gCGACCuCGAUCCCGaugCGGGagACCcGCu -3'
miRNA:   3'- -GUUGGuGCUGGGGUa--GCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 59607 0.66 0.986356
Target:  5'- aCGACgGCGAUCggCCAUCGcAGUuCCUGg -3'
miRNA:   3'- -GUUGgUGCUGG--GGUAGC-UCAuGGACg -5'
14148 3' -53.8 NC_003521.1 + 102905 0.66 0.984687
Target:  5'- gAACCGCGACCCgcCAgccaCGGGUacgguuugaggGCCgagGCg -3'
miRNA:   3'- gUUGGUGCUGGG--GUa---GCUCA-----------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 157512 0.66 0.986196
Target:  5'- cCGACCGCuACCCCcuGUCGcacaauGUggacauggccuacGCCUGCg -3'
miRNA:   3'- -GUUGGUGcUGGGG--UAGCu-----CA-------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 205888 0.66 0.985706
Target:  5'- -cGCCGCGACUacgagggucugcgCCGcuaccugcugcgcuUCGAGggcGCCUGCg -3'
miRNA:   3'- guUGGUGCUGG-------------GGU--------------AGCUCa--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 206475 0.66 0.987882
Target:  5'- gGACCugGGCCUCA-CGGccuccgcCCUGCg -3'
miRNA:   3'- gUUGGugCUGGGGUaGCUcau----GGACG- -5'
14148 3' -53.8 NC_003521.1 + 209269 0.66 0.989272
Target:  5'- gCGACCugGGCUUCGcCGAGUGgUcGCa -3'
miRNA:   3'- -GUUGGugCUGGGGUaGCUCAUgGaCG- -5'
14148 3' -53.8 NC_003521.1 + 209059 0.66 0.990654
Target:  5'- gCGACUggcGCGACCCCGaugugccggUCGAGgcggcggaggcggugGCCgcgGCg -3'
miRNA:   3'- -GUUGG---UGCUGGGGU---------AGCUCa--------------UGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.