miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 110660 0.66 0.987882
Target:  5'- aCggUCACGGCCCgGUCG---GCCaGCg -3'
miRNA:   3'- -GuuGGUGCUGGGgUAGCucaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 100112 0.66 0.986356
Target:  5'- aCAGCaggauGCGACCCCG-CGgcuggcGGU-CCUGCg -3'
miRNA:   3'- -GUUGg----UGCUGGGGUaGC------UCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 102905 0.66 0.984687
Target:  5'- gAACCGCGACCCgcCAgccaCGGGUacgguuugaggGCCgagGCg -3'
miRNA:   3'- gUUGGUGCUGGG--GUa---GCUCA-----------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 85493 0.66 0.990535
Target:  5'- --cCCGCGcCCCCGcCGGG-ACCcGCg -3'
miRNA:   3'- guuGGUGCuGGGGUaGCUCaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 231262 0.66 0.987882
Target:  5'- uCAAUCACGACUCgCuggCGAGUguGCCUuGUa -3'
miRNA:   3'- -GUUGGUGCUGGG-Gua-GCUCA--UGGA-CG- -5'
14148 3' -53.8 NC_003521.1 + 145218 0.66 0.987882
Target:  5'- uCGGCCACcaaguucuacgaGGCCUUcgUGAGcggcUGCCUGCa -3'
miRNA:   3'- -GUUGGUG------------CUGGGGuaGCUC----AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 9433 0.66 0.989792
Target:  5'- aGACCACcACCgUCAUCacuagcaccucuacAGUACCUGCg -3'
miRNA:   3'- gUUGGUGcUGG-GGUAGc-------------UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 134721 0.66 0.987882
Target:  5'- -cGCCACG-CCCUgccCGAGgcCUUGCg -3'
miRNA:   3'- guUGGUGCuGGGGua-GCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 181548 0.66 0.987882
Target:  5'- -cGCCGCGACCgCUcaguaGUCGG--ACCUGUa -3'
miRNA:   3'- guUGGUGCUGG-GG-----UAGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 148588 0.66 0.986356
Target:  5'- aGACCgcGCGGCgCCCGUCGGGc-CCUcacaGCg -3'
miRNA:   3'- gUUGG--UGCUG-GGGUAGCUCauGGA----CG- -5'
14148 3' -53.8 NC_003521.1 + 209059 0.66 0.990654
Target:  5'- gCGACUggcGCGACCCCGaugugccggUCGAGgcggcggaggcggugGCCgcgGCg -3'
miRNA:   3'- -GUUGG---UGCUGGGGU---------AGCUCa--------------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 167448 0.66 0.989272
Target:  5'- gGACCACcACCCCGUggucagaucCGAGagggaagGCCUGa -3'
miRNA:   3'- gUUGGUGcUGGGGUA---------GCUCa------UGGACg -5'
14148 3' -53.8 NC_003521.1 + 73192 0.66 0.990414
Target:  5'- uGGCCGgcaucgacgugacCGACCCC---GAGcGCCUGCg -3'
miRNA:   3'- gUUGGU-------------GCUGGGGuagCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 25684 0.66 0.987882
Target:  5'- uCGGCCACGaugcaaGCCCCcUCGuggcuGGUACCgaacacGCg -3'
miRNA:   3'- -GUUGGUGC------UGGGGuAGC-----UCAUGGa-----CG- -5'
14148 3' -53.8 NC_003521.1 + 115180 0.66 0.984687
Target:  5'- --uUCAaGACCaUCGaCGAGUACCUGCu -3'
miRNA:   3'- guuGGUgCUGG-GGUaGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 201392 0.66 0.984687
Target:  5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3'
miRNA:   3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 232200 0.66 0.989272
Target:  5'- -cGCCAUgGGCCCCcgCGGGUGgUggugGCu -3'
miRNA:   3'- guUGGUG-CUGGGGuaGCUCAUgGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 183903 0.66 0.990535
Target:  5'- gAGCCACGGCCgUCAcggCGcuGUACCggUGCa -3'
miRNA:   3'- gUUGGUGCUGG-GGUa--GCu-CAUGG--ACG- -5'
14148 3' -53.8 NC_003521.1 + 103940 0.66 0.984687
Target:  5'- uCGACCGCGAacaccggcgccaCCCgCcgCGAGU-CCgUGCa -3'
miRNA:   3'- -GUUGGUGCU------------GGG-GuaGCUCAuGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 1164 0.66 0.984687
Target:  5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3'
miRNA:   3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.