miRNA display CGI


Results 1 - 20 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 148731 0.7 0.922648
Target:  5'- aGGCCucCGugCCCAUCGugcAGUGCCUc- -3'
miRNA:   3'- gUUGGu-GCugGGGUAGC---UCAUGGAcg -5'
14148 3' -53.8 NC_003521.1 + 131460 0.71 0.892846
Target:  5'- aGGCCGCGcucucgGCCUCGUCGGccuCCUGCg -3'
miRNA:   3'- gUUGGUGC------UGGGGUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 113182 0.71 0.897356
Target:  5'- gGGCCGCGAggugCCCGUCuucgugcacgagcaGcAGUACCUGCg -3'
miRNA:   3'- gUUGGUGCUg---GGGUAG--------------C-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 44012 0.71 0.899255
Target:  5'- uCAACCACGGCCugCCcUCGcccaccUACCUGCu -3'
miRNA:   3'- -GUUGGUGCUGG--GGuAGCuc----AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 129599 0.71 0.899255
Target:  5'- cCGGCCGCGACgCUCuaauaGUCGAGUcGCCgGCc -3'
miRNA:   3'- -GUUGGUGCUG-GGG-----UAGCUCA-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 122206 0.7 0.90361
Target:  5'- --cUCGCGACUCCAUgcugccugcgagcgCGGGUGCCgGCg -3'
miRNA:   3'- guuGGUGCUGGGGUA--------------GCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 64189 0.7 0.905443
Target:  5'- ---aCGCGACUgCGUCaGcAGUACCUGCu -3'
miRNA:   3'- guugGUGCUGGgGUAG-C-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 20310 0.7 0.911405
Target:  5'- aGACCugGACCuCCA-CGGGcAUCUGUc -3'
miRNA:   3'- gUUGGugCUGG-GGUaGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 201266 0.7 0.91714
Target:  5'- gCAGCCAgaUGGCCggCGUCGGGgccaccgACCUGCg -3'
miRNA:   3'- -GUUGGU--GCUGGg-GUAGCUCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 219063 0.71 0.876578
Target:  5'- -cGCCACGGCgCCCAggugcaugagcagCGAG-ACCUGUu -3'
miRNA:   3'- guUGGUGCUG-GGGUa------------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 209746 0.71 0.865059
Target:  5'- gCAGCCACGGCagCCG--GAGUACCgGCu -3'
miRNA:   3'- -GUUGGUGCUGg-GGUagCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 204891 0.72 0.825858
Target:  5'- -cACUACGuCCCCGUUGAGgACCagGCg -3'
miRNA:   3'- guUGGUGCuGGGGUAGCUCaUGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 135927 0.77 0.584147
Target:  5'- uCGGCCACGGCCgCGggaugugcgacgccUCGGGcGCCUGCg -3'
miRNA:   3'- -GUUGGUGCUGGgGU--------------AGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 150066 0.74 0.726193
Target:  5'- -cAUCGuCGACCUgGUCGAGUGCgUGCu -3'
miRNA:   3'- guUGGU-GCUGGGgUAGCUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 185186 0.74 0.735814
Target:  5'- gCAACCGCGGCUUCcUCGuuUACUUGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGuAGCucAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 138887 0.74 0.745348
Target:  5'- gCGGCCACgugGACCCCAccggCGAGUacGCCgGCu -3'
miRNA:   3'- -GUUGGUG---CUGGGGUa---GCUCA--UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 63068 0.74 0.754788
Target:  5'- aCGACCGCGACCCCGUacagcuGcGCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGGGGUAgcu---CaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 113631 0.73 0.791422
Target:  5'- uCAGCCGCGucaACCCCGUggcCGAGUACaUGUu -3'
miRNA:   3'- -GUUGGUGC---UGGGGUA---GCUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 232743 0.73 0.800258
Target:  5'- -cGCUGCGAuCCCUAUCGAGUGuauuucuacggUCUGCg -3'
miRNA:   3'- guUGGUGCU-GGGGUAGCUCAU-----------GGACG- -5'
14148 3' -53.8 NC_003521.1 + 28312 0.73 0.817483
Target:  5'- gCGGCaGCGACCCCggCGcg-GCCUGCg -3'
miRNA:   3'- -GUUGgUGCUGGGGuaGCucaUGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.