miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 106528 1.11 0.005871
Target:  5'- uCAACCACGACCCCAUCGAGUACCUGCu -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 95237 0.71 0.899255
Target:  5'- aGGCCACGGCCgCcgCGucGUGCCgccGCa -3'
miRNA:   3'- gUUGGUGCUGGgGuaGCu-CAUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 152514 0.7 0.905443
Target:  5'- aGACC-CGcauCCUCAUCGAGgcggcCCUGCg -3'
miRNA:   3'- gUUGGuGCu--GGGGUAGCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 209059 0.66 0.990654
Target:  5'- gCGACUggcGCGACCCCGaugugccggUCGAGgcggcggaggcggugGCCgcgGCg -3'
miRNA:   3'- -GUUGG---UGCUGGGGU---------AGCUCa--------------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 213723 0.76 0.667135
Target:  5'- cCGGCCuGCG-CgCCGUCGAGaGCCUGCa -3'
miRNA:   3'- -GUUGG-UGCuGgGGUAGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 88315 0.74 0.726193
Target:  5'- --cCCugGACCCCAUCcccGAGgccUAUCUGCa -3'
miRNA:   3'- guuGGugCUGGGGUAG---CUC---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 71381 0.72 0.825858
Target:  5'- -cACgGCGACCCgCuguUCGAGgaccGCCUGCu -3'
miRNA:   3'- guUGgUGCUGGG-Gu--AGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 196115 0.72 0.834064
Target:  5'- -cACCAgGAUCUgGcgcgucUCGGGUACCUGCg -3'
miRNA:   3'- guUGGUgCUGGGgU------AGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 52901 0.72 0.857597
Target:  5'- gCGACCAgGACUCUcgCGAGcugcugaucgACCUGCc -3'
miRNA:   3'- -GUUGGUgCUGGGGuaGCUCa---------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 21768 0.71 0.899255
Target:  5'- -cACCugGGCgCCGUgGcGUGCCUGUc -3'
miRNA:   3'- guUGGugCUGgGGUAgCuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 163406 0.72 0.857597
Target:  5'- uCGGCCGUGGCCCCGUCGucGGcUGCCgcUGCc -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGC--UC-AUGG--ACG- -5'
14148 3' -53.8 NC_003521.1 + 112662 0.72 0.84994
Target:  5'- ---gCACGACCCCA-CGcccUGCCUGCa -3'
miRNA:   3'- guugGUGCUGGGGUaGCuc-AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 154381 0.83 0.316282
Target:  5'- aCGAUCACGACCUCAUCGAcGUGCC-GCc -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGCU-CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 59896 0.71 0.879375
Target:  5'- -cACCGCG-CCaCCAUCGAGcgGCC-GCa -3'
miRNA:   3'- guUGGUGCuGG-GGUAGCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 206212 0.79 0.48086
Target:  5'- -cGCUGCGACCCCGUgcaCGAGUccaucugcgcgcGCCUGCa -3'
miRNA:   3'- guUGGUGCUGGGGUA---GCUCA------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 53854 0.72 0.842093
Target:  5'- gCGACgGCGuCCUCGgccggcguguaCGAGUGCCUGCu -3'
miRNA:   3'- -GUUGgUGCuGGGGUa----------GCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 15145 0.71 0.899255
Target:  5'- -cGCCugGACCCCAaCGccuuGGUG-CUGCa -3'
miRNA:   3'- guUGGugCUGGGGUaGC----UCAUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 66702 0.7 0.905443
Target:  5'- gGGCUGCGACCCCc-UGAGggUCUGCu -3'
miRNA:   3'- gUUGGUGCUGGGGuaGCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 183832 0.77 0.58713
Target:  5'- uGACCGCGGCC--AUCGAGgagaGCCUGCa -3'
miRNA:   3'- gUUGGUGCUGGggUAGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 151087 0.73 0.791422
Target:  5'- gGACCGCcGACCCC-UCGGGUcggGCC-GCu -3'
miRNA:   3'- gUUGGUG-CUGGGGuAGCUCA---UGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.