miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 1038 0.7 0.91714
Target:  5'- gCAGCCAgaUGGCCggCGUCGGGgccaccgACCUGCg -3'
miRNA:   3'- -GUUGGU--GCUGGg-GUAGCUCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 1164 0.66 0.984687
Target:  5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3'
miRNA:   3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 2355 0.68 0.954817
Target:  5'- gGGCCGCGucuccGCCCCGcccgcCGAGgccgcCCUGCg -3'
miRNA:   3'- gUUGGUGC-----UGGGGUa----GCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 2408 0.68 0.970966
Target:  5'- uCGACCgcgagcacugggaGCGGCCCCGcUGGGacgcCCUGCa -3'
miRNA:   3'- -GUUGG-------------UGCUGGGGUaGCUCau--GGACG- -5'
14148 3' -53.8 NC_003521.1 + 3673 0.69 0.950896
Target:  5'- gCGGCCGgGACCCuCGUCGGaUGCUgacGCg -3'
miRNA:   3'- -GUUGGUgCUGGG-GUAGCUcAUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 6003 0.66 0.989272
Target:  5'- uCGGCCACGaACCCCGacgaCGAG-GCCgaggaGCc -3'
miRNA:   3'- -GUUGGUGC-UGGGGUa---GCUCaUGGa----CG- -5'
14148 3' -53.8 NC_003521.1 + 8617 0.67 0.980889
Target:  5'- aCAGCCACcACCaCCcgCGGGgGCCcaugGCg -3'
miRNA:   3'- -GUUGGUGcUGG-GGuaGCUCaUGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 9433 0.66 0.989792
Target:  5'- aGACCACcACCgUCAUCacuagcaccucuacAGUACCUGCg -3'
miRNA:   3'- gUUGGUGcUGG-GGUAGc-------------UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 11834 0.69 0.932975
Target:  5'- cCAuCCACGGCUggUAUCGGG-ACCUGCg -3'
miRNA:   3'- -GUuGGUGCUGGg-GUAGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 12125 0.67 0.978744
Target:  5'- -cGCCGCG-CUCCuUCGGGUGCg-GCg -3'
miRNA:   3'- guUGGUGCuGGGGuAGCUCAUGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 14338 0.67 0.980889
Target:  5'- -cGCCuACGACaCCCG-CGAccaGUACCUGg -3'
miRNA:   3'- guUGG-UGCUG-GGGUaGCU---CAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 15145 0.71 0.899255
Target:  5'- -cGCCugGACCCCAaCGccuuGGUG-CUGCa -3'
miRNA:   3'- guUGGugCUGGGGUaGC----UCAUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 16607 0.68 0.965291
Target:  5'- gGACCGCGACUacgggCGUC-AGUACCgcugGCu -3'
miRNA:   3'- gUUGGUGCUGGg----GUAGcUCAUGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 17436 0.68 0.962011
Target:  5'- ---aCACGGCCCgCGUCGGGgcGCC-GCg -3'
miRNA:   3'- guugGUGCUGGG-GUAGCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 17938 0.67 0.982867
Target:  5'- gUAGCCAgCGACCUCAaggucuUCGccAGaacgGCCUGCu -3'
miRNA:   3'- -GUUGGU-GCUGGGGU------AGC--UCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 19639 0.69 0.932975
Target:  5'- -uGCCugAUGAUCuCCAUCGuGUGCCUGg -3'
miRNA:   3'- guUGG--UGCUGG-GGUAGCuCAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 20310 0.7 0.911405
Target:  5'- aGACCugGACCuCCA-CGGGcAUCUGUc -3'
miRNA:   3'- gUUGGugCUGG-GGUaGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 20509 0.69 0.942387
Target:  5'- cCGugCugGuCCCCAUCGuGUGCaUGUu -3'
miRNA:   3'- -GUugGugCuGGGGUAGCuCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 21140 0.68 0.971245
Target:  5'- -cGCCAgaGAUCCCA--GAGUACCgGCa -3'
miRNA:   3'- guUGGUg-CUGGGGUagCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 21422 0.67 0.982867
Target:  5'- gCAGCUAcuCGGCCUCGUCGugcccGUcGCCUGUc -3'
miRNA:   3'- -GUUGGU--GCUGGGGUAGCu----CA-UGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.