miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 236702 0.68 0.968367
Target:  5'- ----aACGGCCUCGUCugguugGGGUGCCUGUu -3'
miRNA:   3'- guuggUGCUGGGGUAG------CUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 234662 0.67 0.978744
Target:  5'- -cGCCugG-CCCCGccagGGGUugCUGCu -3'
miRNA:   3'- guUGGugCuGGGGUag--CUCAugGACG- -5'
14148 3' -53.8 NC_003521.1 + 233931 0.66 0.986356
Target:  5'- --cCCGCG-CCCCAggcCGAGUAgaUGCc -3'
miRNA:   3'- guuGGUGCuGGGGUa--GCUCAUggACG- -5'
14148 3' -53.8 NC_003521.1 + 232743 0.73 0.800258
Target:  5'- -cGCUGCGAuCCCUAUCGAGUGuauuucuacggUCUGCg -3'
miRNA:   3'- guUGGUGCU-GGGGUAGCUCAU-----------GGACG- -5'
14148 3' -53.8 NC_003521.1 + 232200 0.66 0.989272
Target:  5'- -cGCCAUgGGCCCCcgCGGGUGgUggugGCu -3'
miRNA:   3'- guUGGUG-CUGGGGuaGCUCAUgGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 231262 0.66 0.987882
Target:  5'- uCAAUCACGACUCgCuggCGAGUguGCCUuGUa -3'
miRNA:   3'- -GUUGGUGCUGGG-Gua-GCUCA--UGGA-CG- -5'
14148 3' -53.8 NC_003521.1 + 224592 0.69 0.946754
Target:  5'- uGGCUcCGAaaCCGUCGuAGUACCUGUc -3'
miRNA:   3'- gUUGGuGCUggGGUAGC-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 223821 0.69 0.950896
Target:  5'- -cGCCGCcGCCaCCG-CGGGcGCCUGCu -3'
miRNA:   3'- guUGGUGcUGG-GGUaGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 223613 0.69 0.952491
Target:  5'- aGACCuCGGCCuCCGUCuGGUaggcguccacgaugcGCCUGCc -3'
miRNA:   3'- gUUGGuGCUGG-GGUAGcUCA---------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 221283 0.69 0.942387
Target:  5'- gCGGCCAaGACCCCGauccUCGGGU-CCgaggGCc -3'
miRNA:   3'- -GUUGGUgCUGGGGU----AGCUCAuGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 219063 0.71 0.876578
Target:  5'- -cGCCACGGCgCCCAggugcaugagcagCGAG-ACCUGUu -3'
miRNA:   3'- guUGGUGCUG-GGGUa------------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 216891 0.67 0.978744
Target:  5'- aGGCCAUccaGGCCaCCAgcuugucgugCGAGU-CCUGCg -3'
miRNA:   3'- gUUGGUG---CUGG-GGUa---------GCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 215047 0.68 0.962011
Target:  5'- gCAGCCGCGuggaGCCCC--UGGGcUGCCUGg -3'
miRNA:   3'- -GUUGGUGC----UGGGGuaGCUC-AUGGACg -5'
14148 3' -53.8 NC_003521.1 + 213723 0.76 0.667135
Target:  5'- cCGGCCuGCG-CgCCGUCGAGaGCCUGCa -3'
miRNA:   3'- -GUUGG-UGCuGgGGUAGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 213433 0.66 0.988454
Target:  5'- aCAACCACGAgauCCCCGUgGccuggccccccggcuGGaGCCUGg -3'
miRNA:   3'- -GUUGGUGCU---GGGGUAgC---------------UCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 212716 0.67 0.980889
Target:  5'- gGGCCuCGAUCUUGggCGAGcGCCUGCu -3'
miRNA:   3'- gUUGGuGCUGGGGUa-GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 211274 0.68 0.965291
Target:  5'- gAGCCACGG-CCUAUCGuGGUACggccaaguCUGCa -3'
miRNA:   3'- gUUGGUGCUgGGGUAGC-UCAUG--------GACG- -5'
14148 3' -53.8 NC_003521.1 + 210577 0.66 0.987882
Target:  5'- uGGCCACGGCaaCcgCGcGgACCUGCa -3'
miRNA:   3'- gUUGGUGCUGggGuaGCuCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 209746 0.71 0.865059
Target:  5'- gCAGCCACGGCagCCG--GAGUACCgGCu -3'
miRNA:   3'- -GUUGGUGCUGg-GGUagCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 209269 0.66 0.989272
Target:  5'- gCGACCugGGCUUCGcCGAGUGgUcGCa -3'
miRNA:   3'- -GUUGGugCUGGGGUaGCUCAUgGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.