miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 106528 1.11 0.005871
Target:  5'- uCAACCACGACCCCAUCGAGUACCUGCu -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 154381 0.83 0.316282
Target:  5'- aCGAUCACGACCUCAUCGAcGUGCC-GCc -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGCU-CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 116806 0.79 0.462497
Target:  5'- aCGGCCGCGACCCCGacUGGGUG-CUGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGUa-GCUCAUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 206212 0.79 0.48086
Target:  5'- -cGCUGCGACCCCGUgcaCGAGUccaucugcgcgcGCCUGCa -3'
miRNA:   3'- guUGGUGCUGGGGUA---GCUCA------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 135927 0.77 0.584147
Target:  5'- uCGGCCACGGCCgCGggaugugcgacgccUCGGGcGCCUGCg -3'
miRNA:   3'- -GUUGGUGCUGGgGU--------------AGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 183832 0.77 0.58713
Target:  5'- uGACCGCGGCC--AUCGAGgagaGCCUGCa -3'
miRNA:   3'- gUUGGUGCUGGggUAGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 213723 0.76 0.667135
Target:  5'- cCGGCCuGCG-CgCCGUCGAGaGCCUGCa -3'
miRNA:   3'- -GUUGG-UGCuGgGGUAGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 88315 0.74 0.726193
Target:  5'- --cCCugGACCCCAUCcccGAGgccUAUCUGCa -3'
miRNA:   3'- guuGGugCUGGGGUAG---CUC---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 150066 0.74 0.726193
Target:  5'- -cAUCGuCGACCUgGUCGAGUGCgUGCu -3'
miRNA:   3'- guUGGU-GCUGGGgUAGCUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 185186 0.74 0.735814
Target:  5'- gCAACCGCGGCUUCcUCGuuUACUUGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGuAGCucAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 138887 0.74 0.745348
Target:  5'- gCGGCCACgugGACCCCAccggCGAGUacGCCgGCu -3'
miRNA:   3'- -GUUGGUG---CUGGGGUa---GCUCA--UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 63068 0.74 0.754788
Target:  5'- aCGACCGCGACCCCGUacagcuGcGCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGGGGUAgcu---CaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 113631 0.73 0.791422
Target:  5'- uCAGCCGCGucaACCCCGUggcCGAGUACaUGUu -3'
miRNA:   3'- -GUUGGUGC---UGGGGUA---GCUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 151087 0.73 0.791422
Target:  5'- gGACCGCcGACCCC-UCGGGUcggGCC-GCu -3'
miRNA:   3'- gUUGGUG-CUGGGGuAGCUCA---UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 232743 0.73 0.800258
Target:  5'- -cGCUGCGAuCCCUAUCGAGUGuauuucuacggUCUGCg -3'
miRNA:   3'- guUGGUGCU-GGGGUAGCUCAU-----------GGACG- -5'
14148 3' -53.8 NC_003521.1 + 28312 0.73 0.817483
Target:  5'- gCGGCaGCGACCCCggCGcg-GCCUGCg -3'
miRNA:   3'- -GUUGgUGCUGGGGuaGCucaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 204891 0.72 0.825858
Target:  5'- -cACUACGuCCCCGUUGAGgACCagGCg -3'
miRNA:   3'- guUGGUGCuGGGGUAGCUCaUGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 71381 0.72 0.825858
Target:  5'- -cACgGCGACCCgCuguUCGAGgaccGCCUGCu -3'
miRNA:   3'- guUGgUGCUGGG-Gu--AGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 196115 0.72 0.834064
Target:  5'- -cACCAgGAUCUgGcgcgucUCGGGUACCUGCg -3'
miRNA:   3'- guUGGUgCUGGGgU------AGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 53854 0.72 0.842093
Target:  5'- gCGACgGCGuCCUCGgccggcguguaCGAGUGCCUGCu -3'
miRNA:   3'- -GUUGgUGCuGGGGUa----------GCUCAUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.