miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 112662 0.72 0.84994
Target:  5'- ---gCACGACCCCA-CGcccUGCCUGCa -3'
miRNA:   3'- guugGUGCUGGGGUaGCuc-AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 52901 0.72 0.857597
Target:  5'- gCGACCAgGACUCUcgCGAGcugcugaucgACCUGCc -3'
miRNA:   3'- -GUUGGUgCUGGGGuaGCUCa---------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 49573 0.72 0.857597
Target:  5'- -uGCCGCuuCCCCGaCGAGUGCCgaggaagGCg -3'
miRNA:   3'- guUGGUGcuGGGGUaGCUCAUGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 163406 0.72 0.857597
Target:  5'- uCGGCCGUGGCCCCGUCGucGGcUGCCgcUGCc -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGC--UC-AUGG--ACG- -5'
14148 3' -53.8 NC_003521.1 + 209746 0.71 0.865059
Target:  5'- gCAGCCACGGCagCCG--GAGUACCgGCu -3'
miRNA:   3'- -GUUGGUGCUGg-GGUagCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 219063 0.71 0.876578
Target:  5'- -cGCCACGGCgCCCAggugcaugagcagCGAG-ACCUGUu -3'
miRNA:   3'- guUGGUGCUG-GGGUa------------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 59896 0.71 0.879375
Target:  5'- -cACCGCG-CCaCCAUCGAGcgGCC-GCa -3'
miRNA:   3'- guUGGUGCuGG-GGUAGCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 131460 0.71 0.892846
Target:  5'- aGGCCGCGcucucgGCCUCGUCGGccuCCUGCg -3'
miRNA:   3'- gUUGGUGC------UGGGGUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 113182 0.71 0.897356
Target:  5'- gGGCCGCGAggugCCCGUCuucgugcacgagcaGcAGUACCUGCg -3'
miRNA:   3'- gUUGGUGCUg---GGGUAG--------------C-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 44012 0.71 0.899255
Target:  5'- uCAACCACGGCCugCCcUCGcccaccUACCUGCu -3'
miRNA:   3'- -GUUGGUGCUGG--GGuAGCuc----AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 129599 0.71 0.899255
Target:  5'- cCGGCCGCGACgCUCuaauaGUCGAGUcGCCgGCc -3'
miRNA:   3'- -GUUGGUGCUG-GGG-----UAGCUCA-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 15145 0.71 0.899255
Target:  5'- -cGCCugGACCCCAaCGccuuGGUG-CUGCa -3'
miRNA:   3'- guUGGugCUGGGGUaGC----UCAUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 21768 0.71 0.899255
Target:  5'- -cACCugGGCgCCGUgGcGUGCCUGUc -3'
miRNA:   3'- guUGGugCUGgGGUAgCuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 95237 0.71 0.899255
Target:  5'- aGGCCACGGCCgCcgCGucGUGCCgccGCa -3'
miRNA:   3'- gUUGGUGCUGGgGuaGCu-CAUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 122206 0.7 0.90361
Target:  5'- --cUCGCGACUCCAUgcugccugcgagcgCGGGUGCCgGCg -3'
miRNA:   3'- guuGGUGCUGGGGUA--------------GCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 64189 0.7 0.905443
Target:  5'- ---aCGCGACUgCGUCaGcAGUACCUGCu -3'
miRNA:   3'- guugGUGCUGGgGUAG-C-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 66702 0.7 0.905443
Target:  5'- gGGCUGCGACCCCc-UGAGggUCUGCu -3'
miRNA:   3'- gUUGGUGCUGGGGuaGCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 152514 0.7 0.905443
Target:  5'- aGACC-CGcauCCUCAUCGAGgcggcCCUGCg -3'
miRNA:   3'- gUUGGuGCu--GGGGUAGCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 20310 0.7 0.911405
Target:  5'- aGACCugGACCuCCA-CGGGcAUCUGUc -3'
miRNA:   3'- gUUGGugCUGG-GGUaGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 136146 0.7 0.911405
Target:  5'- --cCCACGGCCCCcUCGAGcuCC-GCg -3'
miRNA:   3'- guuGGUGCUGGGGuAGCUCauGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.