miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 116183 0.66 0.989272
Target:  5'- -uGCC-CGACCCgGugaUCGAcaacUACCUGCu -3'
miRNA:   3'- guUGGuGCUGGGgU---AGCUc---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 157806 0.66 0.988454
Target:  5'- gGACCGCGAUCUCAUCcucacguauaacaaaGAGUgGCCauuauUGCu -3'
miRNA:   3'- gUUGGUGCUGGGGUAG---------------CUCA-UGG-----ACG- -5'
14148 3' -53.8 NC_003521.1 + 213433 0.66 0.988454
Target:  5'- aCAACCACGAgauCCCCGUgGccuggccccccggcuGGaGCCUGg -3'
miRNA:   3'- -GUUGGUGCU---GGGGUAgC---------------UCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 25684 0.66 0.987882
Target:  5'- uCGGCCACGaugcaaGCCCCcUCGuggcuGGUACCgaacacGCg -3'
miRNA:   3'- -GUUGGUGC------UGGGGuAGC-----UCAUGGa-----CG- -5'
14148 3' -53.8 NC_003521.1 + 134721 0.66 0.987882
Target:  5'- -cGCCACG-CCCUgccCGAGgcCUUGCg -3'
miRNA:   3'- guUGGUGCuGGGGua-GCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 110660 0.66 0.987882
Target:  5'- aCggUCACGGCCCgGUCG---GCCaGCg -3'
miRNA:   3'- -GuuGGUGCUGGGgUAGCucaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 83873 0.66 0.987882
Target:  5'- --uCCuCGACCCagucuUCGGGUGCauCUGCg -3'
miRNA:   3'- guuGGuGCUGGGgu---AGCUCAUG--GACG- -5'
14148 3' -53.8 NC_003521.1 + 231262 0.66 0.987882
Target:  5'- uCAAUCACGACUCgCuggCGAGUguGCCUuGUa -3'
miRNA:   3'- -GUUGGUGCUGGG-Gua-GCUCA--UGGA-CG- -5'
14148 3' -53.8 NC_003521.1 + 206475 0.66 0.987882
Target:  5'- gGACCugGGCCUCA-CGGccuccgcCCUGCg -3'
miRNA:   3'- gUUGGugCUGGGGUaGCUcau----GGACG- -5'
14148 3' -53.8 NC_003521.1 + 181548 0.66 0.987882
Target:  5'- -cGCCGCGACCgCUcaguaGUCGG--ACCUGUa -3'
miRNA:   3'- guUGGUGCUGG-GG-----UAGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 145218 0.66 0.987882
Target:  5'- uCGGCCACcaaguucuacgaGGCCUUcgUGAGcggcUGCCUGCa -3'
miRNA:   3'- -GUUGGUG------------CUGGGGuaGCUC----AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 193317 0.66 0.987882
Target:  5'- uCAGCUACGGCUgCAUCGcGGU-CCggGCc -3'
miRNA:   3'- -GUUGGUGCUGGgGUAGC-UCAuGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 204987 0.66 0.987882
Target:  5'- gCGACCuCGAUCCCGaugCGGGagACCcGCu -3'
miRNA:   3'- -GUUGGuGCUGGGGUa--GCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 210577 0.66 0.987882
Target:  5'- uGGCCACGGCaaCcgCGcGgACCUGCa -3'
miRNA:   3'- gUUGGUGCUGggGuaGCuCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 137666 0.66 0.987882
Target:  5'- --uCCACGACUaCGUgGAGacgcGCCUGCu -3'
miRNA:   3'- guuGGUGCUGGgGUAgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 59607 0.66 0.986356
Target:  5'- aCGACgGCGAUCggCCAUCGcAGUuCCUGg -3'
miRNA:   3'- -GUUGgUGCUGG--GGUAGC-UCAuGGACg -5'
14148 3' -53.8 NC_003521.1 + 233931 0.66 0.986356
Target:  5'- --cCCGCG-CCCCAggcCGAGUAgaUGCc -3'
miRNA:   3'- guuGGUGCuGGGGUa--GCUCAUggACG- -5'
14148 3' -53.8 NC_003521.1 + 148588 0.66 0.986356
Target:  5'- aGACCgcGCGGCgCCCGUCGGGc-CCUcacaGCg -3'
miRNA:   3'- gUUGG--UGCUG-GGGUAGCUCauGGA----CG- -5'
14148 3' -53.8 NC_003521.1 + 100112 0.66 0.986356
Target:  5'- aCAGCaggauGCGACCCCG-CGgcuggcGGU-CCUGCg -3'
miRNA:   3'- -GUUGg----UGCUGGGGUaGC------UCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 166130 0.66 0.986356
Target:  5'- -uGCCGCGgcGCCgCCGUCGcugcUGCUUGCg -3'
miRNA:   3'- guUGGUGC--UGG-GGUAGCuc--AUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.