miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 100112 0.66 0.986356
Target:  5'- aCAGCaggauGCGACCCCG-CGgcuggcGGU-CCUGCg -3'
miRNA:   3'- -GUUGg----UGCUGGGGUaGC------UCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 157512 0.66 0.986196
Target:  5'- cCGACCGCuACCCCcuGUCGcacaauGUggacauggccuacGCCUGCg -3'
miRNA:   3'- -GUUGGUGcUGGGG--UAGCu-----CA-------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 205888 0.66 0.985706
Target:  5'- -cGCCGCGACUacgagggucugcgCCGcuaccugcugcgcuUCGAGggcGCCUGCg -3'
miRNA:   3'- guUGGUGCUGG-------------GGU--------------AGCUCa--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 190953 0.66 0.985372
Target:  5'- -cGCCACGACCgCCAUcaugagcaugcuggaCGAG-GCCgagcgGCa -3'
miRNA:   3'- guUGGUGCUGG-GGUA---------------GCUCaUGGa----CG- -5'
14148 3' -53.8 NC_003521.1 + 103940 0.66 0.984687
Target:  5'- uCGACCGCGAacaccggcgccaCCCgCcgCGAGU-CCgUGCa -3'
miRNA:   3'- -GUUGGUGCU------------GGG-GuaGCUCAuGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 146782 0.66 0.984687
Target:  5'- cCGGCCugGacagaaggcggGCCCCggCGAGcUAUgUGCg -3'
miRNA:   3'- -GUUGGugC-----------UGGGGuaGCUC-AUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 115180 0.66 0.984687
Target:  5'- --uUCAaGACCaUCGaCGAGUACCUGCu -3'
miRNA:   3'- guuGGUgCUGG-GGUaGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 1164 0.66 0.984687
Target:  5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3'
miRNA:   3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 102905 0.66 0.984687
Target:  5'- gAACCGCGACCCgcCAgccaCGGGUacgguuugaggGCCgagGCg -3'
miRNA:   3'- gUUGGUGCUGGG--GUa---GCUCA-----------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 207286 0.66 0.984687
Target:  5'- cCGGCCGCcuuuacuucaucGGCCUCAUCagugucuauGAGUGCgUGCc -3'
miRNA:   3'- -GUUGGUG------------CUGGGGUAG---------CUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 201392 0.66 0.984687
Target:  5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3'
miRNA:   3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 73727 0.67 0.982867
Target:  5'- gGGCCGCGACCgCuUCGuGcAgCUGCu -3'
miRNA:   3'- gUUGGUGCUGGgGuAGCuCaUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 160266 0.67 0.982867
Target:  5'- gGACUcgACGACCUCAU-GAGcgGCCUGg -3'
miRNA:   3'- gUUGG--UGCUGGGGUAgCUCa-UGGACg -5'
14148 3' -53.8 NC_003521.1 + 21422 0.67 0.982867
Target:  5'- gCAGCUAcuCGGCCUCGUCGugcccGUcGCCUGUc -3'
miRNA:   3'- -GUUGGU--GCUGGGGUAGCu----CA-UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 17938 0.67 0.982867
Target:  5'- gUAGCCAgCGACCUCAaggucuUCGccAGaacgGCCUGCu -3'
miRNA:   3'- -GUUGGU-GCUGGGGU------AGC--UCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 154227 0.67 0.982867
Target:  5'- -cACCACGAgcgcuucuuCCCCGgcugCGGcGUGCCcUGCc -3'
miRNA:   3'- guUGGUGCU---------GGGGUa---GCU-CAUGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 212716 0.67 0.980889
Target:  5'- gGGCCuCGAUCUUGggCGAGcGCCUGCu -3'
miRNA:   3'- gUUGGuGCUGGGGUa-GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 114912 0.67 0.980889
Target:  5'- gGACCugGACguguCCC-UCGAGcGgCUGCu -3'
miRNA:   3'- gUUGGugCUG----GGGuAGCUCaUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 150339 0.67 0.980889
Target:  5'- ---aCACGGCCCCGUcucggcCGAGgucUGCgUGCg -3'
miRNA:   3'- guugGUGCUGGGGUA------GCUC---AUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 162916 0.67 0.980889
Target:  5'- uGACgGgGACCUCAagGAGaACCUGUu -3'
miRNA:   3'- gUUGgUgCUGGGGUagCUCaUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.