miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 123694 0.67 0.783114
Target:  5'- -cGUGGCgguggaagaggaGGCGGCGGCUgaGCgGCg -3'
miRNA:   3'- uuCACCGag----------CUGCCGCCGAagCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 167674 0.67 0.786639
Target:  5'- ---aGGC-CGA-GGCGGCgcCGCCGCc -3'
miRNA:   3'- uucaCCGaGCUgCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 170662 0.67 0.786639
Target:  5'- cGAGUGGaCUCGugauaGGCaGCcgcgcUCGCCGCa -3'
miRNA:   3'- -UUCACC-GAGCug---CCGcCGa----AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 181448 0.67 0.786639
Target:  5'- cAAGUGcuGCgCGGCGuccaGCGGCUggcgCGCCGCc -3'
miRNA:   3'- -UUCAC--CGaGCUGC----CGCCGAa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 98319 0.67 0.741261
Target:  5'- uGGUGGCggcggccaCGACGGUGGUUgCGCUg- -3'
miRNA:   3'- uUCACCGa-------GCUGCCGCCGAaGCGGug -5'
14160 3' -59.9 NC_003521.1 + 204731 0.67 0.777788
Target:  5'- aGGGUGGCgaggguggUGAUGGaGGCgcCGCCGCc -3'
miRNA:   3'- -UUCACCGa-------GCUGCCgCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 63237 0.67 0.741261
Target:  5'- ---cGGC-CGGaacCGGCGGCgcCGCCACc -3'
miRNA:   3'- uucaCCGaGCU---GCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 107715 0.67 0.750544
Target:  5'- -uGUGGCUguggCGAgGGCGGCUgUUGCUg- -3'
miRNA:   3'- uuCACCGA----GCUgCCGCCGA-AGCGGug -5'
14160 3' -59.9 NC_003521.1 + 135232 0.68 0.693695
Target:  5'- uGAGcGGCUgcgcCGGCGGCGGCgaCGaCACg -3'
miRNA:   3'- -UUCaCCGA----GCUGCCGCCGaaGCgGUG- -5'
14160 3' -59.9 NC_003521.1 + 7745 0.68 0.699484
Target:  5'- cGAGcGGCggaGGCGGCGGCagucccagcagaCGCCGCa -3'
miRNA:   3'- -UUCaCCGag-CUGCCGCCGaa----------GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 197001 0.68 0.72244
Target:  5'- ---cGGC-CGGCGGCGGCUgacccggcUGCUGCg -3'
miRNA:   3'- uucaCCGaGCUGCCGCCGAa-------GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 187587 0.68 0.731891
Target:  5'- cGGG-GGCUucgcCGGCGGUcGCUUCGcCCGCg -3'
miRNA:   3'- -UUCaCCGA----GCUGCCGcCGAAGC-GGUG- -5'
14160 3' -59.9 NC_003521.1 + 147800 0.68 0.703334
Target:  5'- aGGGUgcGGCU--ACGGCGGCUagaCGCCAUg -3'
miRNA:   3'- -UUCA--CCGAgcUGCCGCCGAa--GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 91641 0.68 0.72244
Target:  5'- -cGUGGC-CGcCGGUGGCgacgcgCGCCGa -3'
miRNA:   3'- uuCACCGaGCuGCCGCCGaa----GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 47630 0.68 0.72244
Target:  5'- cAGGcGGCcgUGACGGCGGCUcUgGCgGCa -3'
miRNA:   3'- -UUCaCCGa-GCUGCCGCCGA-AgCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 223354 0.68 0.693695
Target:  5'- ---aGGcCUCGGCGGCGGcCUUgGUCAg -3'
miRNA:   3'- uucaCC-GAGCUGCCGCC-GAAgCGGUg -5'
14160 3' -59.9 NC_003521.1 + 136542 0.68 0.693695
Target:  5'- --cUGGCcuUUGA-GGCGcGCUUCGCCGCc -3'
miRNA:   3'- uucACCG--AGCUgCCGC-CGAAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 138148 0.68 0.712919
Target:  5'- uGGGU-GCUgccCGGCGGCUUCGCCGu -3'
miRNA:   3'- -UUCAcCGAgcuGCCGCCGAAGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 226357 0.68 0.731891
Target:  5'- cGGGUaGCgccgCGggaGCGGCGGCUgacgcCGCCGCa -3'
miRNA:   3'- -UUCAcCGa---GC---UGCCGCCGAa----GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 74773 0.68 0.712919
Target:  5'- -cGUGGCUggaguaugaCGACGGCGGCagcgguaGCgGCg -3'
miRNA:   3'- uuCACCGA---------GCUGCCGCCGaag----CGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.