miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 149158 0.66 0.811561
Target:  5'- -cGUGGCcaccucgUCGuccgucuCGGCGcGCgUCGCCACc -3'
miRNA:   3'- uuCACCG-------AGCu------GCCGC-CGaAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 80007 0.66 0.836806
Target:  5'- ---gGGCUUG--GGCGGCUUCuGCUGCg -3'
miRNA:   3'- uucaCCGAGCugCCGCCGAAG-CGGUG- -5'
14160 3' -59.9 NC_003521.1 + 131073 0.67 0.750544
Target:  5'- cGGUGGCggCGACcGCGGCUcgCGCgGg -3'
miRNA:   3'- uUCACCGa-GCUGcCGCCGAa-GCGgUg -5'
14160 3' -59.9 NC_003521.1 + 31846 0.67 0.750544
Target:  5'- aAGGUGGCguugaagaaGACGGCGGCgcggUGCgaGCg -3'
miRNA:   3'- -UUCACCGag-------CUGCCGCCGaa--GCGg-UG- -5'
14160 3' -59.9 NC_003521.1 + 29079 0.67 0.750544
Target:  5'- uGGUGGgcaUCGAgcucaUGGUGGCgcacuUUCGCCGCa -3'
miRNA:   3'- uUCACCg--AGCU-----GCCGCCG-----AAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 63237 0.67 0.741261
Target:  5'- ---cGGC-CGGaacCGGCGGCgcCGCCACc -3'
miRNA:   3'- uucaCCGaGCU---GCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 178981 0.67 0.741261
Target:  5'- cGGUGGauuUCGGCGGUGaccuauCUUCGUCACa -3'
miRNA:   3'- uUCACCg--AGCUGCCGCc-----GAAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 204731 0.67 0.777788
Target:  5'- aGGGUGGCgaggguggUGAUGGaGGCgcCGCCGCc -3'
miRNA:   3'- -UUCACCGa-------GCUGCCgCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 122728 0.67 0.759732
Target:  5'- -cGUGG-UCGugGGCGaCggCGCCGCc -3'
miRNA:   3'- uuCACCgAGCugCCGCcGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 102973 0.67 0.786639
Target:  5'- cGG-GGCUCuGGCggGGCGGCccaGCCGCg -3'
miRNA:   3'- uUCaCCGAG-CUG--CCGCCGaagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 46645 0.67 0.768816
Target:  5'- ---cGGCgUCGGCGGCGGgaUCGUaGCc -3'
miRNA:   3'- uucaCCG-AGCUGCCGCCgaAGCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 120898 0.67 0.777788
Target:  5'- cAGGUGG-UCGGgGGCGGCUgcuugcguUUGCgGCu -3'
miRNA:   3'- -UUCACCgAGCUgCCGCCGA--------AGCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 77710 0.67 0.777788
Target:  5'- -cGUGGCggcguuguuggCGACGGCGGCcUCGgUggGCg -3'
miRNA:   3'- uuCACCGa----------GCUGCCGCCGaAGCgG--UG- -5'
14160 3' -59.9 NC_003521.1 + 180928 0.67 0.786639
Target:  5'- cGGccGCUCGAUGGUGGCgcggUGCCGu -3'
miRNA:   3'- uUCacCGAGCUGCCGCCGaa--GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 78134 0.67 0.786639
Target:  5'- uGGUgGGCgCGuuaGCGGCGGCg--GCCGCg -3'
miRNA:   3'- uUCA-CCGaGC---UGCCGCCGaagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 74570 0.67 0.786639
Target:  5'- uGAG-GGCggCGACGgaGCGGCggCGCgGCg -3'
miRNA:   3'- -UUCaCCGa-GCUGC--CGCCGaaGCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 181448 0.67 0.786639
Target:  5'- cAAGUGcuGCgCGGCGuccaGCGGCUggcgCGCCGCc -3'
miRNA:   3'- -UUCAC--CGaGCUGC----CGCCGAa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 167674 0.67 0.786639
Target:  5'- ---aGGC-CGA-GGCGGCgcCGCCGCc -3'
miRNA:   3'- uucaCCGaGCUgCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 162137 0.67 0.768816
Target:  5'- cGAGUGcaugaGCgcaGACGGCGGCUUccccugCGCCGa -3'
miRNA:   3'- -UUCAC-----CGag-CUGCCGCCGAA------GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 170662 0.67 0.786639
Target:  5'- cGAGUGGaCUCGugauaGGCaGCcgcgcUCGCCGCa -3'
miRNA:   3'- -UUCACC-GAGCug---CCGcCGa----AGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.