Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14160 | 3' | -59.9 | NC_003521.1 | + | 13850 | 0.72 | 0.467703 |
Target: 5'- --uUGGCUCGGCgcgggggucucugcgGGCGGCgcCGCCAUg -3' miRNA: 3'- uucACCGAGCUG---------------CCGCCGaaGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 103649 | 0.72 | 0.473089 |
Target: 5'- gGGGgcaGCUCGGCGGCGGC--CGCUGCg -3' miRNA: 3'- -UUCac-CGAGCUGCCGCCGaaGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 18720 | 0.72 | 0.482135 |
Target: 5'- -uGUGGCUgccgcUGGCGGCGGCgaUCGUgGCg -3' miRNA: 3'- uuCACCGA-----GCUGCCGCCGa-AGCGgUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 122527 | 0.72 | 0.491263 |
Target: 5'- -uGUGGgUUGuuGCGGCGGCgucccuagaggUCGCCGCa -3' miRNA: 3'- uuCACCgAGC--UGCCGCCGa----------AGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 186663 | 0.71 | 0.509754 |
Target: 5'- cGGUGGCggaGGCGGCGGCcUCuCCAa -3' miRNA: 3'- uUCACCGag-CUGCCGCCGaAGcGGUg -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 116880 | 0.71 | 0.509754 |
Target: 5'- cAGUGGCgCGGCuGCGGCggcgCGCCGg -3' miRNA: 3'- uUCACCGaGCUGcCGCCGaa--GCGGUg -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 98960 | 0.71 | 0.524754 |
Target: 5'- uGGUGGCggcuagCGACGGCGGCgccuuuaggaggCGUCAg -3' miRNA: 3'- uUCACCGa-----GCUGCCGCCGaa----------GCGGUg -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 98484 | 0.71 | 0.547556 |
Target: 5'- cGGcGGCcgUGGCGGCGGCcUCGCgCACc -3' miRNA: 3'- uUCaCCGa-GCUGCCGCCGaAGCG-GUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 123173 | 0.71 | 0.547556 |
Target: 5'- gAGGUGGCggCGGCGGCGGgggaccgUagGCCGCa -3' miRNA: 3'- -UUCACCGa-GCUGCCGCCg------AagCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 198412 | 0.71 | 0.547556 |
Target: 5'- cGGUGGCUuccguuguggUGACGGUGGCg--GCCAUg -3' miRNA: 3'- uUCACCGA----------GCUGCCGCCGaagCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 168414 | 0.71 | 0.557151 |
Target: 5'- uGGUGGCUagGGCgGGCGGCaggGCCGCg -3' miRNA: 3'- uUCACCGAg-CUG-CCGCCGaagCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 97711 | 0.71 | 0.561966 |
Target: 5'- uGGUGGCcgacucgUCGuccucauccuccgGCGGCGGCUgcgaauccgacguaUCGCCACc -3' miRNA: 3'- uUCACCG-------AGC-------------UGCCGCCGA--------------AGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 155614 | 0.7 | 0.564861 |
Target: 5'- gAGGUGGCgaccgcuguucUCGGCGGCGGUgguagcagaagCGCCGu -3' miRNA: 3'- -UUCACCG-----------AGCUGCCGCCGaa---------GCGGUg -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 197653 | 0.7 | 0.566793 |
Target: 5'- cGGUGGCgcUCGuGCGGCaGCagCGCCACc -3' miRNA: 3'- uUCACCG--AGC-UGCCGcCGaaGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 209559 | 0.7 | 0.566793 |
Target: 5'- gGGGUGGCggCGACGGUGGCgggggUCcggggGCgCACg -3' miRNA: 3'- -UUCACCGa-GCUGCCGCCGa----AG-----CG-GUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 73142 | 0.7 | 0.566793 |
Target: 5'- cGGG-GGCagCGGCGGCGGCgcCGCCuCg -3' miRNA: 3'- -UUCaCCGa-GCUGCCGCCGaaGCGGuG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 21956 | 0.7 | 0.576478 |
Target: 5'- cAGUgGGCgagcgCGGCGGgacucguuCGGUUUCGCCGCu -3' miRNA: 3'- uUCA-CCGa----GCUGCC--------GCCGAAGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 39449 | 0.7 | 0.582306 |
Target: 5'- -cGUGGCUCccgggGACGGCaGCgguucgugucccgUCGCCGCc -3' miRNA: 3'- uuCACCGAG-----CUGCCGcCGa------------AGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 239676 | 0.7 | 0.582306 |
Target: 5'- -cGUGGCUCccgggGACGGCaGCgguucgugucccgUCGCCGCc -3' miRNA: 3'- uuCACCGAG-----CUGCCGcCGa------------AGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 103436 | 0.7 | 0.586199 |
Target: 5'- -cGUGaGCUCcgccaggucGCGGCGGUUgcgCGCCACg -3' miRNA: 3'- uuCAC-CGAGc--------UGCCGCCGAa--GCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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