Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14160 | 3' | -59.9 | NC_003521.1 | + | 66367 | 0.66 | 0.795364 |
Target: 5'- -cGUGGC-CGGCGGCGaGCagCGaCACc -3' miRNA: 3'- uuCACCGaGCUGCCGC-CGaaGCgGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 34212 | 0.66 | 0.795364 |
Target: 5'- aGGGcGGCguaGACGGCGcccGUgUCGCCGCa -3' miRNA: 3'- -UUCaCCGag-CUGCCGC---CGaAGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 170662 | 0.67 | 0.786639 |
Target: 5'- cGAGUGGaCUCGugauaGGCaGCcgcgcUCGCCGCa -3' miRNA: 3'- -UUCACC-GAGCug---CCGcCGa----AGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 78134 | 0.67 | 0.786639 |
Target: 5'- uGGUgGGCgCGuuaGCGGCGGCg--GCCGCg -3' miRNA: 3'- uUCA-CCGaGC---UGCCGCCGaagCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 102973 | 0.67 | 0.786639 |
Target: 5'- cGG-GGCUCuGGCggGGCGGCccaGCCGCg -3' miRNA: 3'- uUCaCCGAG-CUG--CCGCCGaagCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 180928 | 0.67 | 0.786639 |
Target: 5'- cGGccGCUCGAUGGUGGCgcggUGCCGu -3' miRNA: 3'- uUCacCGAGCUGCCGCCGaa--GCGGUg -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 167674 | 0.67 | 0.786639 |
Target: 5'- ---aGGC-CGA-GGCGGCgcCGCCGCc -3' miRNA: 3'- uucaCCGaGCUgCCGCCGaaGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 74570 | 0.67 | 0.786639 |
Target: 5'- uGAG-GGCggCGACGgaGCGGCggCGCgGCg -3' miRNA: 3'- -UUCaCCGa-GCUGC--CGCCGaaGCGgUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 181448 | 0.67 | 0.786639 |
Target: 5'- cAAGUGcuGCgCGGCGuccaGCGGCUggcgCGCCGCc -3' miRNA: 3'- -UUCAC--CGaGCUGC----CGCCGAa---GCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 123694 | 0.67 | 0.783114 |
Target: 5'- -cGUGGCgguggaagaggaGGCGGCGGCUgaGCgGCg -3' miRNA: 3'- uuCACCGag----------CUGCCGCCGAagCGgUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 77710 | 0.67 | 0.777788 |
Target: 5'- -cGUGGCggcguuguuggCGACGGCGGCcUCGgUggGCg -3' miRNA: 3'- uuCACCGa----------GCUGCCGCCGaAGCgG--UG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 204731 | 0.67 | 0.777788 |
Target: 5'- aGGGUGGCgaggguggUGAUGGaGGCgcCGCCGCc -3' miRNA: 3'- -UUCACCGa-------GCUGCCgCCGaaGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 115844 | 0.67 | 0.777788 |
Target: 5'- --cUGGCUCaGGCgGGCGGCgcaCGCCuCg -3' miRNA: 3'- uucACCGAG-CUG-CCGCCGaa-GCGGuG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 120898 | 0.67 | 0.777788 |
Target: 5'- cAGGUGG-UCGGgGGCGGCUgcuugcguUUGCgGCu -3' miRNA: 3'- -UUCACCgAGCUgCCGCCGA--------AGCGgUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 162137 | 0.67 | 0.768816 |
Target: 5'- cGAGUGcaugaGCgcaGACGGCGGCUUccccugCGCCGa -3' miRNA: 3'- -UUCAC-----CGag-CUGCCGCCGAA------GCGGUg -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 46645 | 0.67 | 0.768816 |
Target: 5'- ---cGGCgUCGGCGGCGGgaUCGUaGCc -3' miRNA: 3'- uucaCCG-AGCUGCCGCCgaAGCGgUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 36977 | 0.67 | 0.763378 |
Target: 5'- cGGGU-GCUCGGCGGCgacauccgcgacgagGGCgUCGCgGCg -3' miRNA: 3'- -UUCAcCGAGCUGCCG---------------CCGaAGCGgUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 122728 | 0.67 | 0.759732 |
Target: 5'- -cGUGG-UCGugGGCGaCggCGCCGCc -3' miRNA: 3'- uuCACCgAGCugCCGCcGaaGCGGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 104688 | 0.67 | 0.757902 |
Target: 5'- cGAGggGGC-CGugGGCGGCgucgacgugcccUCGaCCGCg -3' miRNA: 3'- -UUCa-CCGaGCugCCGCCGa-----------AGC-GGUG- -5' |
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14160 | 3' | -59.9 | NC_003521.1 | + | 163758 | 0.67 | 0.751468 |
Target: 5'- cAGcGGCgcucaCGGCGGCGGCaacaacgguagcggCGCCACc -3' miRNA: 3'- uUCaCCGa----GCUGCCGCCGaa------------GCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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