miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 59421 0.74 0.395894
Target:  5'- -cGUGGCacgCGACaGCGGCgcCGCCGCc -3'
miRNA:   3'- uuCACCGa--GCUGcCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 59610 0.69 0.664523
Target:  5'- uAGUGGCggCGGCcccGGCGGCgacCGCgGCu -3'
miRNA:   3'- uUCACCGa-GCUG---CCGCCGaa-GCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 60739 0.75 0.341757
Target:  5'- ---gGGCaagaaCGGCGGCGGCagUCGCCGCg -3'
miRNA:   3'- uucaCCGa----GCUGCCGCCGa-AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 63237 0.67 0.741261
Target:  5'- ---cGGC-CGGaacCGGCGGCgcCGCCACc -3'
miRNA:   3'- uucaCCGaGCU---GCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 66367 0.66 0.795364
Target:  5'- -cGUGGC-CGGCGGCGaGCagCGaCACc -3'
miRNA:   3'- uuCACCGaGCUGCCGC-CGaaGCgGUG- -5'
14160 3' -59.9 NC_003521.1 + 73142 0.7 0.566793
Target:  5'- cGGG-GGCagCGGCGGCGGCgcCGCCuCg -3'
miRNA:   3'- -UUCaCCGa-GCUGCCGCCGaaGCGGuG- -5'
14160 3' -59.9 NC_003521.1 + 74570 0.67 0.786639
Target:  5'- uGAG-GGCggCGACGgaGCGGCggCGCgGCg -3'
miRNA:   3'- -UUCaCCGa-GCUGC--CGCCGaaGCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 74773 0.68 0.712919
Target:  5'- -cGUGGCUggaguaugaCGACGGCGGCagcgguaGCgGCg -3'
miRNA:   3'- uuCACCGA---------GCUGCCGCCGaag----CGgUG- -5'
14160 3' -59.9 NC_003521.1 + 75547 0.75 0.349154
Target:  5'- cAGcGGCgcCGGCGGCGGCUaCGCCAg -3'
miRNA:   3'- uUCaCCGa-GCUGCCGCCGAaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 76221 0.7 0.606704
Target:  5'- uGAGUGGCggCGGcCGGUGGCguggcgguuacugucUCGCCAg -3'
miRNA:   3'- -UUCACCGa-GCU-GCCGCCGa--------------AGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 76354 0.69 0.674281
Target:  5'- ---cGGCUgCGGCGGCGGCa--GCgGCg -3'
miRNA:   3'- uucaCCGA-GCUGCCGCCGaagCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 77036 0.73 0.420729
Target:  5'- ---aGGC-CGGCGGUGGUggCGCCGCu -3'
miRNA:   3'- uucaCCGaGCUGCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 77710 0.67 0.777788
Target:  5'- -cGUGGCggcguuguuggCGACGGCGGCcUCGgUggGCg -3'
miRNA:   3'- uuCACCGa----------GCUGCCGCCGaAGCgG--UG- -5'
14160 3' -59.9 NC_003521.1 + 78134 0.67 0.786639
Target:  5'- uGGUgGGCgCGuuaGCGGCGGCg--GCCGCg -3'
miRNA:   3'- uUCA-CCGaGC---UGCCGCCGaagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 80007 0.66 0.836806
Target:  5'- ---gGGCUUG--GGCGGCUUCuGCUGCg -3'
miRNA:   3'- uucaCCGAGCugCCGCCGAAG-CGGUG- -5'
14160 3' -59.9 NC_003521.1 + 82870 0.68 0.731891
Target:  5'- cGGGUucGGCUCucggaaGACGGCacccgcuguuGGCgcgUCGCCACu -3'
miRNA:   3'- -UUCA--CCGAG------CUGCCG----------CCGa--AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 84252 0.66 0.828833
Target:  5'- gGGGUGGaugCGAUGGCGGU--CGCUggGCa -3'
miRNA:   3'- -UUCACCga-GCUGCCGCCGaaGCGG--UG- -5'
14160 3' -59.9 NC_003521.1 + 90821 0.74 0.364289
Target:  5'- aAGGUGGCgUCGucguGCGGCGGgUgcgCGCCGCc -3'
miRNA:   3'- -UUCACCG-AGC----UGCCGCCgAa--GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 91641 0.68 0.72244
Target:  5'- -cGUGGC-CGcCGGUGGCgacgcgCGCCGa -3'
miRNA:   3'- uuCACCGaGCuGCCGCCGaa----GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 91860 0.68 0.72244
Target:  5'- aGGGcGGCggaccaggaCGGCGGCGGCggugCGaCCACg -3'
miRNA:   3'- -UUCaCCGa--------GCUGCCGCCGaa--GC-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.