miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 5572 0.69 0.644943
Target:  5'- ---gGGCUCGGCGGUGGaaaUCGCUg- -3'
miRNA:   3'- uucaCCGAGCUGCCGCCga-AGCGGug -5'
14160 3' -59.9 NC_003521.1 + 6084 0.7 0.605725
Target:  5'- ---cGGC-CGguGCGGCGGCguucCGCCACg -3'
miRNA:   3'- uucaCCGaGC--UGCCGCCGaa--GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 7745 0.68 0.699484
Target:  5'- cGAGcGGCggaGGCGGCGGCagucccagcagaCGCCGCa -3'
miRNA:   3'- -UUCaCCGag-CUGCCGCCGaa----------GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 13850 0.72 0.467703
Target:  5'- --uUGGCUCGGCgcgggggucucugcgGGCGGCgcCGCCAUg -3'
miRNA:   3'- uucACCGAGCUG---------------CCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 14437 0.66 0.828833
Target:  5'- -cGUGGUgcacaCGgcccuGCGGCGGCgucagcCGCCGCu -3'
miRNA:   3'- uuCACCGa----GC-----UGCCGCCGaa----GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 18720 0.72 0.482135
Target:  5'- -uGUGGCUgccgcUGGCGGCGGCgaUCGUgGCg -3'
miRNA:   3'- uuCACCGA-----GCUGCCGCCGa-AGCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 19740 0.7 0.604747
Target:  5'- -cGUGGCggUGACGGCgucgGGCUUCcacuucaGCCACc -3'
miRNA:   3'- uuCACCGa-GCUGCCG----CCGAAG-------CGGUG- -5'
14160 3' -59.9 NC_003521.1 + 21956 0.7 0.576478
Target:  5'- cAGUgGGCgagcgCGGCGGgacucguuCGGUUUCGCCGCu -3'
miRNA:   3'- uUCA-CCGa----GCUGCC--------GCCGAAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 29079 0.67 0.750544
Target:  5'- uGGUGGgcaUCGAgcucaUGGUGGCgcacuUUCGCCGCa -3'
miRNA:   3'- uUCACCg--AGCU-----GCCGCCG-----AAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 31698 0.66 0.828833
Target:  5'- aAAGUGGggCGGCGGCagcaugugcgcGuGCUgggaCGCCGCg -3'
miRNA:   3'- -UUCACCgaGCUGCCG-----------C-CGAa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 31846 0.67 0.750544
Target:  5'- aAGGUGGCguugaagaaGACGGCGGCgcggUGCgaGCg -3'
miRNA:   3'- -UUCACCGag-------CUGCCGCCGaa--GCGg-UG- -5'
14160 3' -59.9 NC_003521.1 + 34212 0.66 0.795364
Target:  5'- aGGGcGGCguaGACGGCGcccGUgUCGCCGCa -3'
miRNA:   3'- -UUCaCCGag-CUGCCGC---CGaAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 36353 0.66 0.795364
Target:  5'- aGGGgcucgGGCUggCGugGcGCGGCUUCGCgUGCu -3'
miRNA:   3'- -UUCa----CCGA--GCugC-CGCCGAAGCG-GUG- -5'
14160 3' -59.9 NC_003521.1 + 36977 0.67 0.763378
Target:  5'- cGGGU-GCUCGGCGGCgacauccgcgacgagGGCgUCGCgGCg -3'
miRNA:   3'- -UUCAcCGAGCUGCCG---------------CCGaAGCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 39449 0.7 0.582306
Target:  5'- -cGUGGCUCccgggGACGGCaGCgguucgugucccgUCGCCGCc -3'
miRNA:   3'- uuCACCGAG-----CUGCCGcCGa------------AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 39663 0.7 0.615519
Target:  5'- --aUGGCUCGGCuGGUGGUguuaGCCAUg -3'
miRNA:   3'- uucACCGAGCUG-CCGCCGaag-CGGUG- -5'
14160 3' -59.9 NC_003521.1 + 41302 0.66 0.828833
Target:  5'- ----aGCUguACGGUgGGCUUCGCCACa -3'
miRNA:   3'- uucacCGAgcUGCCG-CCGAAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 42613 0.73 0.446482
Target:  5'- ---cGGC-CGcCGGCGGCgccgUCGCCGCc -3'
miRNA:   3'- uucaCCGaGCuGCCGCCGa---AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 46645 0.67 0.768816
Target:  5'- ---cGGCgUCGGCGGCGGgaUCGUaGCc -3'
miRNA:   3'- uucaCCG-AGCUGCCGCCgaAGCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 47630 0.68 0.72244
Target:  5'- cAGGcGGCcgUGACGGCGGCUcUgGCgGCa -3'
miRNA:   3'- -UUCaCCGa-GCUGCCGCCGA-AgCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.