miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 93183 0.69 0.625324
Target:  5'- cGG-GGCUCGACGGuCGGaggUGCCAg -3'
miRNA:   3'- uUCaCCGAGCUGCC-GCCgaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 155614 0.7 0.564861
Target:  5'- gAGGUGGCgaccgcuguucUCGGCGGCGGUgguagcagaagCGCCGu -3'
miRNA:   3'- -UUCACCG-----------AGCUGCCGCCGaa---------GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 209559 0.7 0.566793
Target:  5'- gGGGUGGCggCGACGGUGGCgggggUCcggggGCgCACg -3'
miRNA:   3'- -UUCACCGa-GCUGCCGCCGa----AG-----CG-GUG- -5'
14160 3' -59.9 NC_003521.1 + 73142 0.7 0.566793
Target:  5'- cGGG-GGCagCGGCGGCGGCgcCGCCuCg -3'
miRNA:   3'- -UUCaCCGa-GCUGCCGCCGaaGCGGuG- -5'
14160 3' -59.9 NC_003521.1 + 239676 0.7 0.582306
Target:  5'- -cGUGGCUCccgggGACGGCaGCgguucgugucccgUCGCCGCc -3'
miRNA:   3'- uuCACCGAG-----CUGCCGcCGa------------AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 103436 0.7 0.586199
Target:  5'- -cGUGaGCUCcgccaggucGCGGCGGUUgcgCGCCACg -3'
miRNA:   3'- uuCAC-CGAGc--------UGCCGCCGAa--GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 191084 0.7 0.605725
Target:  5'- -cGUGGUggCGGCGGCGGgCUgcgucUCGuCCACc -3'
miRNA:   3'- uuCACCGa-GCUGCCGCC-GA-----AGC-GGUG- -5'
14160 3' -59.9 NC_003521.1 + 6084 0.7 0.605725
Target:  5'- ---cGGC-CGguGCGGCGGCguucCGCCACg -3'
miRNA:   3'- uucaCCGaGC--UGCCGCCGaa--GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 239890 0.7 0.615519
Target:  5'- --aUGGCUCGGCuGGUGGUguuaGCCAUg -3'
miRNA:   3'- uucACCGAGCUG-CCGCCGaag-CGGUG- -5'
14160 3' -59.9 NC_003521.1 + 168414 0.71 0.557151
Target:  5'- uGGUGGCUagGGCgGGCGGCaggGCCGCg -3'
miRNA:   3'- uUCACCGAg-CUG-CCGCCGaagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 198412 0.71 0.547556
Target:  5'- cGGUGGCUuccguuguggUGACGGUGGCg--GCCAUg -3'
miRNA:   3'- uUCACCGA----------GCUGCCGCCGaagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 98960 0.71 0.524754
Target:  5'- uGGUGGCggcuagCGACGGCGGCgccuuuaggaggCGUCAg -3'
miRNA:   3'- uUCACCGa-----GCUGCCGCCGaa----------GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 150662 0.77 0.261887
Target:  5'- aAGGcGGCUCucCGGCGGCggCGCCGCu -3'
miRNA:   3'- -UUCaCCGAGcuGCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 75547 0.75 0.349154
Target:  5'- cAGcGGCgcCGGCGGCGGCUaCGCCAg -3'
miRNA:   3'- uUCaCCGa-GCUGCCGCCGAaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 59421 0.74 0.395894
Target:  5'- -cGUGGCacgCGACaGCGGCgcCGCCGCc -3'
miRNA:   3'- uuCACCGa--GCUGcCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 124447 0.73 0.446482
Target:  5'- -cGUGGUUgGgccGCGGCGGCacgcgUUCGCCGCc -3'
miRNA:   3'- uuCACCGAgC---UGCCGCCG-----AAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 42613 0.73 0.446482
Target:  5'- ---cGGC-CGcCGGCGGCgccgUCGCCGCc -3'
miRNA:   3'- uucaCCGaGCuGCCGCCGa---AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 18720 0.72 0.482135
Target:  5'- -uGUGGCUgccgcUGGCGGCGGCgaUCGUgGCg -3'
miRNA:   3'- uuCACCGA-----GCUGCCGCCGa-AGCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 122527 0.72 0.491263
Target:  5'- -uGUGGgUUGuuGCGGCGGCgucccuagaggUCGCCGCa -3'
miRNA:   3'- uuCACCgAGC--UGCCGCCGa----------AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 116880 0.71 0.509754
Target:  5'- cAGUGGCgCGGCuGCGGCggcgCGCCGg -3'
miRNA:   3'- uUCACCGaGCUGcCGCCGaa--GCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.