miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 101012 1.06 0.002928
Target:  5'- gAAGUGGCUCGACGGCGGCUUCGCCACc -3'
miRNA:   3'- -UUCACCGAGCUGCCGCCGAAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 123173 0.71 0.547556
Target:  5'- gAGGUGGCggCGGCGGCGGgggaccgUagGCCGCa -3'
miRNA:   3'- -UUCACCGa-GCUGCCGCCg------AagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 97711 0.71 0.561966
Target:  5'- uGGUGGCcgacucgUCGuccucauccuccgGCGGCGGCUgcgaauccgacguaUCGCCACc -3'
miRNA:   3'- uUCACCG-------AGC-------------UGCCGCCGA--------------AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 139776 0.66 0.836806
Target:  5'- ---cGGC-CGuCGGCGGC--CGCCAUg -3'
miRNA:   3'- uucaCCGaGCuGCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 169450 0.76 0.280321
Target:  5'- ---cGGCgUCGGCGGCGGCggguucgUCGCCAg -3'
miRNA:   3'- uucaCCG-AGCUGCCGCCGa------AGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 60739 0.75 0.341757
Target:  5'- ---gGGCaagaaCGGCGGCGGCagUCGCCGCg -3'
miRNA:   3'- uucaCCGa----GCUGCCGCCGa-AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 113280 0.74 0.372025
Target:  5'- --cUGGC-CGACGGCGuGCUgcCGCCGCa -3'
miRNA:   3'- uucACCGaGCUGCCGC-CGAa-GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 111505 0.73 0.412346
Target:  5'- cAGcgGGCUggCGGCGGCGGCgcaCGCCAUc -3'
miRNA:   3'- uUCa-CCGA--GCUGCCGCCGaa-GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 135750 0.73 0.437799
Target:  5'- cGGUGGUggCGGCGGUGGgaUCGCCc- -3'
miRNA:   3'- uUCACCGa-GCUGCCGCCgaAGCGGug -5'
14160 3' -59.9 NC_003521.1 + 186663 0.71 0.509754
Target:  5'- cGGUGGCggaGGCGGCGGCcUCuCCAa -3'
miRNA:   3'- uUCACCGag-CUGCCGCCGaAGcGGUg -5'
14160 3' -59.9 NC_003521.1 + 110687 0.72 0.464129
Target:  5'- cGGUGGCggCaGCGGCGGCgcCGCCGa -3'
miRNA:   3'- uUCACCGa-GcUGCCGCCGaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 97637 0.73 0.429214
Target:  5'- ---aGGCUCGACGuucGCGGCggCGCCGg -3'
miRNA:   3'- uucaCCGAGCUGC---CGCCGaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 123573 0.78 0.227991
Target:  5'- cGGUGGCggGAUGGCGGCggCGCCGg -3'
miRNA:   3'- uUCACCGagCUGCCGCCGaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 13850 0.72 0.467703
Target:  5'- --uUGGCUCGGCgcgggggucucugcgGGCGGCgcCGCCAUg -3'
miRNA:   3'- uucACCGAGCUG---------------CCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 114248 0.76 0.274064
Target:  5'- ---cGGCaCGACGGCGGCUUC-CCGCu -3'
miRNA:   3'- uucaCCGaGCUGCCGCCGAAGcGGUG- -5'
14160 3' -59.9 NC_003521.1 + 77036 0.73 0.420729
Target:  5'- ---aGGC-CGGCGGUGGUggCGCCGCu -3'
miRNA:   3'- uucaCCGaGCUGCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 103649 0.72 0.473089
Target:  5'- gGGGgcaGCUCGGCGGCGGC--CGCUGCg -3'
miRNA:   3'- -UUCac-CGAGCUGCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 98484 0.71 0.547556
Target:  5'- cGGcGGCcgUGGCGGCGGCcUCGCgCACc -3'
miRNA:   3'- uUCaCCGa-GCUGCCGCCGaAGCG-GUG- -5'
14160 3' -59.9 NC_003521.1 + 155250 0.76 0.280321
Target:  5'- uGGUGGUggggggCGGCGGCGGCggCGCCuCa -3'
miRNA:   3'- uUCACCGa-----GCUGCCGCCGaaGCGGuG- -5'
14160 3' -59.9 NC_003521.1 + 90821 0.74 0.364289
Target:  5'- aAGGUGGCgUCGucguGCGGCGGgUgcgCGCCGCc -3'
miRNA:   3'- -UUCACCG-AGC----UGCCGCCgAa--GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.