miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 239890 0.7 0.615519
Target:  5'- --aUGGCUCGGCuGGUGGUguuaGCCAUg -3'
miRNA:   3'- uucACCGAGCUG-CCGCCGaag-CGGUG- -5'
14160 3' -59.9 NC_003521.1 + 239676 0.7 0.582306
Target:  5'- -cGUGGCUCccgggGACGGCaGCgguucgugucccgUCGCCGCc -3'
miRNA:   3'- uuCACCGAG-----CUGCCGcCGa------------AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 236486 0.66 0.812399
Target:  5'- ----cGC-CGGCGGCGGUggCGCCAg -3'
miRNA:   3'- uucacCGaGCUGCCGCCGaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 226357 0.68 0.731891
Target:  5'- cGGGUaGCgccgCGggaGCGGCGGCUgacgcCGCCGCa -3'
miRNA:   3'- -UUCAcCGa---GC---UGCCGCCGAa----GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 223354 0.68 0.693695
Target:  5'- ---aGGcCUCGGCGGCGGcCUUgGUCAg -3'
miRNA:   3'- uucaCC-GAGCUGCCGCC-GAAgCGGUg -5'
14160 3' -59.9 NC_003521.1 + 210422 0.66 0.801391
Target:  5'- -cGUGGUcggCGugGGCGGCgacggcagcguacugUGCUACg -3'
miRNA:   3'- uuCACCGa--GCugCCGCCGaa-------------GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 209559 0.7 0.566793
Target:  5'- gGGGUGGCggCGACGGUGGCgggggUCcggggGCgCACg -3'
miRNA:   3'- -UUCACCGa-GCUGCCGCCGa----AG-----CG-GUG- -5'
14160 3' -59.9 NC_003521.1 + 205337 0.67 0.750544
Target:  5'- ---cGGCgccuccUCGGCGGCGGCagcugCGCCGu -3'
miRNA:   3'- uucaCCG------AGCUGCCGCCGaa---GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 204731 0.67 0.777788
Target:  5'- aGGGUGGCgaggguggUGAUGGaGGCgcCGCCGCc -3'
miRNA:   3'- -UUCACCGa-------GCUGCCgCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 198803 0.66 0.836806
Target:  5'- -cGUGGUgcCGGCGGCGuCUgucgUGCCGCc -3'
miRNA:   3'- uuCACCGa-GCUGCCGCcGAa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 198412 0.71 0.547556
Target:  5'- cGGUGGCUuccguuguggUGACGGUGGCg--GCCAUg -3'
miRNA:   3'- uUCACCGA----------GCUGCCGCCGaagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 197653 0.7 0.566793
Target:  5'- cGGUGGCgcUCGuGCGGCaGCagCGCCACc -3'
miRNA:   3'- uUCACCG--AGC-UGCCGcCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 197294 0.66 0.820694
Target:  5'- gGAGggcGGCUCGACgggagagggGGCGGCaggCGCUgACg -3'
miRNA:   3'- -UUCa--CCGAGCUG---------CCGCCGaa-GCGG-UG- -5'
14160 3' -59.9 NC_003521.1 + 197001 0.68 0.72244
Target:  5'- ---cGGC-CGGCGGCGGCUgacccggcUGCUGCg -3'
miRNA:   3'- uucaCCGaGCUGCCGCCGAa-------GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 191084 0.7 0.605725
Target:  5'- -cGUGGUggCGGCGGCGGgCUgcgucUCGuCCACc -3'
miRNA:   3'- uuCACCGa-GCUGCCGCC-GA-----AGC-GGUG- -5'
14160 3' -59.9 NC_003521.1 + 188290 0.7 0.59595
Target:  5'- aGAGgGGcCUCuuUGGCGGCUcuucuUCGCCGCg -3'
miRNA:   3'- -UUCaCC-GAGcuGCCGCCGA-----AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 187587 0.68 0.731891
Target:  5'- cGGG-GGCUucgcCGGCGGUcGCUUCGcCCGCg -3'
miRNA:   3'- -UUCaCCGA----GCUGCCGcCGAAGC-GGUG- -5'
14160 3' -59.9 NC_003521.1 + 186930 0.69 0.635135
Target:  5'- cGGUGGCgggGGCGGCGGCgaaCGCaACu -3'
miRNA:   3'- uUCACCGag-CUGCCGCCGaa-GCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 186663 0.71 0.509754
Target:  5'- cGGUGGCggaGGCGGCGGCcUCuCCAa -3'
miRNA:   3'- uUCACCGag-CUGCCGCCGaAGcGGUg -5'
14160 3' -59.9 NC_003521.1 + 186616 0.66 0.820694
Target:  5'- cAAG-GGCUacgCGGCGGCGGUggUgGCgGCa -3'
miRNA:   3'- -UUCaCCGA---GCUGCCGCCGa-AgCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.