miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 131073 0.67 0.750544
Target:  5'- cGGUGGCggCGACcGCGGCUcgCGCgGg -3'
miRNA:   3'- uUCACCGa-GCUGcCGCCGAa-GCGgUg -5'
14160 3' -59.9 NC_003521.1 + 107715 0.67 0.750544
Target:  5'- -uGUGGCUguggCGAgGGCGGCUgUUGCUg- -3'
miRNA:   3'- uuCACCGA----GCUgCCGCCGA-AGCGGug -5'
14160 3' -59.9 NC_003521.1 + 29079 0.67 0.750544
Target:  5'- uGGUGGgcaUCGAgcucaUGGUGGCgcacuUUCGCCGCa -3'
miRNA:   3'- uUCACCg--AGCU-----GCCGCCG-----AAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 205337 0.67 0.750544
Target:  5'- ---cGGCgccuccUCGGCGGCGGCagcugCGCCGu -3'
miRNA:   3'- uucaCCG------AGCUGCCGCCGaa---GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 31846 0.67 0.750544
Target:  5'- aAGGUGGCguugaagaaGACGGCGGCgcggUGCgaGCg -3'
miRNA:   3'- -UUCACCGag-------CUGCCGCCGaa--GCGg-UG- -5'
14160 3' -59.9 NC_003521.1 + 98319 0.67 0.741261
Target:  5'- uGGUGGCggcggccaCGACGGUGGUUgCGCUg- -3'
miRNA:   3'- uUCACCGa-------GCUGCCGCCGAaGCGGug -5'
14160 3' -59.9 NC_003521.1 + 178981 0.67 0.741261
Target:  5'- cGGUGGauuUCGGCGGUGaccuauCUUCGUCACa -3'
miRNA:   3'- uUCACCg--AGCUGCCGCc-----GAAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 63237 0.67 0.741261
Target:  5'- ---cGGC-CGGaacCGGCGGCgcCGCCACc -3'
miRNA:   3'- uucaCCGaGCU---GCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 187587 0.68 0.731891
Target:  5'- cGGG-GGCUucgcCGGCGGUcGCUUCGcCCGCg -3'
miRNA:   3'- -UUCaCCGA----GCUGCCGcCGAAGC-GGUG- -5'
14160 3' -59.9 NC_003521.1 + 226357 0.68 0.731891
Target:  5'- cGGGUaGCgccgCGggaGCGGCGGCUgacgcCGCCGCa -3'
miRNA:   3'- -UUCAcCGa---GC---UGCCGCCGAa----GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 82870 0.68 0.731891
Target:  5'- cGGGUucGGCUCucggaaGACGGCacccgcuguuGGCgcgUCGCCACu -3'
miRNA:   3'- -UUCA--CCGAG------CUGCCG----------CCGa--AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 47630 0.68 0.72244
Target:  5'- cAGGcGGCcgUGACGGCGGCUcUgGCgGCa -3'
miRNA:   3'- -UUCaCCGa-GCUGCCGCCGA-AgCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 91641 0.68 0.72244
Target:  5'- -cGUGGC-CGcCGGUGGCgacgcgCGCCGa -3'
miRNA:   3'- uuCACCGaGCuGCCGCCGaa----GCGGUg -5'
14160 3' -59.9 NC_003521.1 + 197001 0.68 0.72244
Target:  5'- ---cGGC-CGGCGGCGGCUgacccggcUGCUGCg -3'
miRNA:   3'- uucaCCGaGCUGCCGCCGAa-------GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 91860 0.68 0.72244
Target:  5'- aGGGcGGCggaccaggaCGGCGGCGGCggugCGaCCACg -3'
miRNA:   3'- -UUCaCCGa--------GCUGCCGCCGaa--GC-GGUG- -5'
14160 3' -59.9 NC_003521.1 + 175435 0.68 0.720542
Target:  5'- uGAGUGGCgugcucggcguaCGAuCGGCGGCg-CGCCGu -3'
miRNA:   3'- -UUCACCGa-----------GCU-GCCGCCGaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 138148 0.68 0.712919
Target:  5'- uGGGU-GCUgccCGGCGGCUUCGCCGu -3'
miRNA:   3'- -UUCAcCGAgcuGCCGCCGAAGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 145864 0.68 0.712919
Target:  5'- ---gGGCcCGGCGGCGGgCggCGCCGa -3'
miRNA:   3'- uucaCCGaGCUGCCGCC-GaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 163357 0.68 0.712919
Target:  5'- cGGUaGCagCGGCGGCGGCagUGUCACg -3'
miRNA:   3'- uUCAcCGa-GCUGCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 74773 0.68 0.712919
Target:  5'- -cGUGGCUggaguaugaCGACGGCGGCagcgguaGCgGCg -3'
miRNA:   3'- uuCACCGA---------GCUGCCGCCGaag----CGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.