miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 147800 0.68 0.703334
Target:  5'- aGGGUgcGGCU--ACGGCGGCUagaCGCCAUg -3'
miRNA:   3'- -UUCA--CCGAgcUGCCGCCGAa--GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 7745 0.68 0.699484
Target:  5'- cGAGcGGCggaGGCGGCGGCagucccagcagaCGCCGCa -3'
miRNA:   3'- -UUCaCCGag-CUGCCGCCGaa----------GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 129179 0.68 0.693695
Target:  5'- ---cGGCgugCGGCGGUuugGGUUUCGCCGg -3'
miRNA:   3'- uucaCCGa--GCUGCCG---CCGAAGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 135232 0.68 0.693695
Target:  5'- uGAGcGGCUgcgcCGGCGGCGGCgaCGaCACg -3'
miRNA:   3'- -UUCaCCGA----GCUGCCGCCGaaGCgGUG- -5'
14160 3' -59.9 NC_003521.1 + 136542 0.68 0.693695
Target:  5'- --cUGGCcuUUGA-GGCGcGCUUCGCCGCc -3'
miRNA:   3'- uucACCG--AGCUgCCGC-CGAAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 223354 0.68 0.693695
Target:  5'- ---aGGcCUCGGCGGCGGcCUUgGUCAg -3'
miRNA:   3'- uucaCC-GAGCUGCCGCC-GAAgCGGUg -5'
14160 3' -59.9 NC_003521.1 + 135651 0.68 0.684007
Target:  5'- cGGGgGGCccagCGuCGGCGGCgUCGUCACc -3'
miRNA:   3'- -UUCaCCGa---GCuGCCGCCGaAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 178240 0.68 0.684007
Target:  5'- ---aGGCUCucgcacugguaGGCGGCGGCgUUGCUGCa -3'
miRNA:   3'- uucaCCGAG-----------CUGCCGCCGaAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 76354 0.69 0.674281
Target:  5'- ---cGGCUgCGGCGGCGGCa--GCgGCg -3'
miRNA:   3'- uucaCCGA-GCUGCCGCCGaagCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 129303 0.69 0.664523
Target:  5'- -cGUGGaaCUUGAUGGCGuGCgcCGCCGCc -3'
miRNA:   3'- uuCACC--GAGCUGCCGC-CGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 117235 0.69 0.664523
Target:  5'- ---cGGC-CG-CGGCGGCUcccggCGCCGCc -3'
miRNA:   3'- uucaCCGaGCuGCCGCCGAa----GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 98382 0.69 0.664523
Target:  5'- gAAGUGGCgccCGAggcuuCGGCGGCgcUGCUGCu -3'
miRNA:   3'- -UUCACCGa--GCU-----GCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 59610 0.69 0.664523
Target:  5'- uAGUGGCggCGGCcccGGCGGCgacCGCgGCu -3'
miRNA:   3'- uUCACCGa-GCUG---CCGCCGaa-GCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 132622 0.69 0.654741
Target:  5'- ---cGGCUUccaGAcuCGGCGGCggCGCCACc -3'
miRNA:   3'- uucaCCGAG---CU--GCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 139791 0.69 0.653762
Target:  5'- --uUGGCgucgcccUCGGCGGUGGCgaaGCCGCc -3'
miRNA:   3'- uucACCG-------AGCUGCCGCCGaagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 5572 0.69 0.644943
Target:  5'- ---gGGCUCGGCGGUGGaaaUCGCUg- -3'
miRNA:   3'- uucaCCGAGCUGCCGCCga-AGCGGug -5'
14160 3' -59.9 NC_003521.1 + 186930 0.69 0.635135
Target:  5'- cGGUGGCgggGGCGGCGGCgaaCGCaACu -3'
miRNA:   3'- uUCACCGag-CUGCCGCCGaa-GCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 92000 0.69 0.625324
Target:  5'- ---cGGC-CGAgGGCaGGCggUCGCCGCg -3'
miRNA:   3'- uucaCCGaGCUgCCG-CCGa-AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 93183 0.69 0.625324
Target:  5'- cGG-GGCUCGACGGuCGGaggUGCCAg -3'
miRNA:   3'- uUCaCCGAGCUGCC-GCCgaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 239890 0.7 0.615519
Target:  5'- --aUGGCUCGGCuGGUGGUguuaGCCAUg -3'
miRNA:   3'- uucACCGAGCUG-CCGCCGaag-CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.