Results 21 - 40 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14164 | 3' | -55.3 | NC_003521.1 | + | 166913 | 0.72 | 0.791417 |
Target: 5'- gCACGGgGCAGAGgua-GaCGGGGCCCa -3' miRNA: 3'- -GUGCCgUGUCUCacugCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 144540 | 0.71 | 0.825338 |
Target: 5'- gACGGUACGGAGUuuGGgGagaaGGGACCCa -3' miRNA: 3'- gUGCCGUGUCUCA--CUgCag--CUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 111089 | 0.71 | 0.825338 |
Target: 5'- gACGGCGCGGAcgcgcucGGCGUCGAcgGGCCg -3' miRNA: 3'- gUGCCGUGUCUca-----CUGCAGCU--CUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 206517 | 0.71 | 0.833429 |
Target: 5'- cCGCGGUuuauaaacguAgAGAGUGACGccCGuGGCCCg -3' miRNA: 3'- -GUGCCG----------UgUCUCACUGCa-GCuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 102950 | 0.71 | 0.833429 |
Target: 5'- uCGCGGUcCAGGcgcucgGGCGUCGGGGCUCu -3' miRNA: 3'- -GUGCCGuGUCUca----CUGCAGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 109896 | 0.71 | 0.841349 |
Target: 5'- cCACGGCGCGGGGguagGacaGCGUCGuGuuGCCUg -3' miRNA: 3'- -GUGCCGUGUCUCa---C---UGCAGCuC--UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 155617 | 0.71 | 0.841349 |
Target: 5'- gCGCGGCGCcGGGUGACGcagugUCGuacgcGACCg -3' miRNA: 3'- -GUGCCGUGuCUCACUGC-----AGCu----CUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 34083 | 0.71 | 0.841349 |
Target: 5'- -uCGuGCAgGGAgGUGugGUCGAugGGCCCg -3' miRNA: 3'- guGC-CGUgUCU-CACugCAGCU--CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 165573 | 0.71 | 0.846789 |
Target: 5'- aCACGGCcacuCAGcgucugccagccuaAGUGACGgUGAGAUCCa -3' miRNA: 3'- -GUGCCGu---GUC--------------UCACUGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 141364 | 0.71 | 0.849093 |
Target: 5'- uGCGGCgGCGGucGGUGACG-CGGuGCCCg -3' miRNA: 3'- gUGCCG-UGUC--UCACUGCaGCUcUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 97652 | 0.7 | 0.870495 |
Target: 5'- gGCGGCGCcGGGUccgacccccacggGAuCGUCGAGgacGCCCa -3' miRNA: 3'- gUGCCGUGuCUCA-------------CU-GCAGCUC---UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 34543 | 0.7 | 0.871204 |
Target: 5'- aGCGGCgACAGAGUucggccuuGugGUCGGGguGCaCCa -3' miRNA: 3'- gUGCCG-UGUCUCA--------CugCAGCUC--UG-GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 91026 | 0.7 | 0.871204 |
Target: 5'- uCACGGCcggccguucGCGGAacgccGUGGCGUUGAGGCguaCCg -3' miRNA: 3'- -GUGCCG---------UGUCU-----CACUGCAGCUCUG---GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 180660 | 0.7 | 0.884957 |
Target: 5'- aGCGGCucCAGGcGuUGGCG-CGAGGCCUg -3' miRNA: 3'- gUGCCGu-GUCU-C-ACUGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 120395 | 0.7 | 0.884957 |
Target: 5'- gACGGCACAGAG-GAUGggugcaaaGAGACa- -3' miRNA: 3'- gUGCCGUGUCUCaCUGCag------CUCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 84410 | 0.7 | 0.88761 |
Target: 5'- gGCGGUuguaggugaccagcgGCAGGGUGGCGaaGcGGCCCu -3' miRNA: 3'- gUGCCG---------------UGUCUCACUGCagCuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 87392 | 0.69 | 0.891525 |
Target: 5'- gGCGGCGgAG-GUGACGcCGAcGCUCa -3' miRNA: 3'- gUGCCGUgUCuCACUGCaGCUcUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 111249 | 0.69 | 0.891525 |
Target: 5'- gCGCGGCgcgGCGGAGcagccauCGUCG-GGCCCg -3' miRNA: 3'- -GUGCCG---UGUCUCacu----GCAGCuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 37421 | 0.69 | 0.891525 |
Target: 5'- gACGGcCugGGAGgcGugGcCGGGACCUg -3' miRNA: 3'- gUGCC-GugUCUCa-CugCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 60577 | 0.69 | 0.89788 |
Target: 5'- uGCGGUACAccGAG-GAgcaGuUCGAGGCCCa -3' miRNA: 3'- gUGCCGUGU--CUCaCUg--C-AGCUCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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