miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 100298 1.11 0.004898
Target:  5'- cCACGGCACAGAGUGACGUCGAGACCCc -3'
miRNA:   3'- -GUGCCGUGUCUCACUGCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 69505 0.81 0.329145
Target:  5'- gACGGCGCAGGcc-GCGUUGAGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUcacUGCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 109822 0.79 0.440716
Target:  5'- gGCGGCACGGAGaUGgccACGUCGuGACuCCg -3'
miRNA:   3'- gUGCCGUGUCUC-AC---UGCAGCuCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 34339 0.78 0.467292
Target:  5'- aGCGGCGCAGGGcgGAgGccgUGAGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUCa-CUgCa--GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 214021 0.76 0.570818
Target:  5'- gACGGCGCucAGGGUGGCGUU-AGACCg -3'
miRNA:   3'- gUGCCGUG--UCUCACUGCAGcUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 111181 0.75 0.60018
Target:  5'- uCACGuGCACGG-G-GACGUUGAGcACCCg -3'
miRNA:   3'- -GUGC-CGUGUCuCaCUGCAGCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 125738 0.75 0.611004
Target:  5'- gACGGCGCAGGGcaggguuucugggcGACGUCGggcuucuccgacguGGACCCa -3'
miRNA:   3'- gUGCCGUGUCUCa-------------CUGCAGC--------------UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 108547 0.75 0.648478
Target:  5'- gGCGGCACacggucaAGAGguUGGCGUUGcGGCCCa -3'
miRNA:   3'- gUGCCGUG-------UCUC--ACUGCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 102010 0.75 0.649463
Target:  5'- --aGGCACAGGGcGugGUUGAGcACCUg -3'
miRNA:   3'- gugCCGUGUCUCaCugCAGCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 66866 0.74 0.698418
Target:  5'- cCugGGCACGGuGacUGugGcCGAGACCa -3'
miRNA:   3'- -GugCCGUGUCuC--ACugCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 168007 0.73 0.708086
Target:  5'- gACGGCgucgaACAGgucuuucuuGGUGGCGccCGAGACCCa -3'
miRNA:   3'- gUGCCG-----UGUC---------UCACUGCa-GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 183431 0.73 0.717694
Target:  5'- gCACGGCGCu--GUGGCG-CGAGAUCg -3'
miRNA:   3'- -GUGCCGUGucuCACUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 5656 0.73 0.717694
Target:  5'- gGCGGCGgAGGGUGGgggGUCGAGACa- -3'
miRNA:   3'- gUGCCGUgUCUCACUg--CAGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 29759 0.73 0.717694
Target:  5'- aACGGCgACAGAGcgagagcagGAgGcUCGGGACCCa -3'
miRNA:   3'- gUGCCG-UGUCUCa--------CUgC-AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 180552 0.73 0.727234
Target:  5'- cCGCGGCGuacCGGGGUGGCG-CGAGAUg- -3'
miRNA:   3'- -GUGCCGU---GUCUCACUGCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 151319 0.73 0.727234
Target:  5'- gGCGGC-CAGgcgGGUGGCGUCcGAGGgCCu -3'
miRNA:   3'- gUGCCGuGUC---UCACUGCAG-CUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 172390 0.73 0.753514
Target:  5'- aCGCGGUugAGGGgcgccGGCGgagccgucgccgCGGGACCCg -3'
miRNA:   3'- -GUGCCGugUCUCa----CUGCa-----------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 76158 0.73 0.755363
Target:  5'- aCACGGCGCAGGuacagGuCGUCGcGGGCCUg -3'
miRNA:   3'- -GUGCCGUGUCUca---CuGCAGC-UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 37764 0.72 0.764549
Target:  5'- -cCGGCuccCAGcGUGAuuCGUCGAGAUCCa -3'
miRNA:   3'- guGCCGu--GUCuCACU--GCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 187817 0.72 0.772722
Target:  5'- cCugGGUugGGAguuugugGUGGCG-CGAGACCUc -3'
miRNA:   3'- -GugCCGugUCU-------CACUGCaGCUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.