miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 1029 0.67 0.953322
Target:  5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3'
miRNA:   3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 5656 0.73 0.717694
Target:  5'- gGCGGCGgAGGGUGGgggGUCGAGACa- -3'
miRNA:   3'- gUGCCGUgUCUCACUg--CAGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 6491 0.68 0.931432
Target:  5'- -cCGGCAgCGGAggcgGUGACGgcaGAGGCUCa -3'
miRNA:   3'- guGCCGU-GUCU----CACUGCag-CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 6590 0.66 0.97521
Target:  5'- --aGGgAuCAGAGUGAUGgggcgCGGGGCCa -3'
miRNA:   3'- gugCCgU-GUCUCACUGCa----GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 10821 0.66 0.979566
Target:  5'- gACGGCugGGgcaucuacucucuGGUGAC--CGAGAgCCCg -3'
miRNA:   3'- gUGCCGugUC-------------UCACUGcaGCUCU-GGG- -5'
14164 3' -55.3 NC_003521.1 + 13906 0.66 0.981813
Target:  5'- -cCGGCGCGGAGggGGCcgcgGAGGCCg -3'
miRNA:   3'- guGCCGUGUCUCa-CUGcag-CUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 15340 0.67 0.967008
Target:  5'- gCGCuGGUGCAGcagucgcgacuGGUGACGUacucGGACCCu -3'
miRNA:   3'- -GUG-CCGUGUC-----------UCACUGCAgc--UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 17020 0.68 0.945221
Target:  5'- gGCGGCGCAGGcc--CGUCGucuggcGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUcacuGCAGCu-----CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 17339 0.66 0.981813
Target:  5'- gACGGCGCAacgcgcuGGUGGCcaacgGcCGAGACUCg -3'
miRNA:   3'- gUGCCGUGUc------UCACUG-----CaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 19664 0.67 0.963891
Target:  5'- gACGGCA---GGUGGCGccaGAGACCg -3'
miRNA:   3'- gUGCCGUgucUCACUGCag-CUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 24168 0.67 0.963891
Target:  5'- cCGCGGagauGCGGAGUcuucgcuuucccGGCGUCGGcgcGCCCg -3'
miRNA:   3'- -GUGCCg---UGUCUCA------------CUGCAGCUc--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 24430 0.67 0.959539
Target:  5'- gACGGCGCAGGGgccGGCGggcUCGgaacagguccgcgcGGACCa -3'
miRNA:   3'- gUGCCGUGUCUCa--CUGC---AGC--------------UCUGGg -5'
14164 3' -55.3 NC_003521.1 + 27037 0.67 0.967008
Target:  5'- gCGCGGCGCAGGGgccgaaaguaGCGUuucaccagcgaCGAG-CCCa -3'
miRNA:   3'- -GUGCCGUGUCUCac--------UGCA-----------GCUCuGGG- -5'
14164 3' -55.3 NC_003521.1 + 27865 0.66 0.96993
Target:  5'- aACGGCACGGAG-GACcUCGA--CCg -3'
miRNA:   3'- gUGCCGUGUCUCaCUGcAGCUcuGGg -5'
14164 3' -55.3 NC_003521.1 + 28861 0.66 0.96993
Target:  5'- gGCGGCGCGGc---ACgGUCGAGucGCCCa -3'
miRNA:   3'- gUGCCGUGUCucacUG-CAGCUC--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 29759 0.73 0.717694
Target:  5'- aACGGCgACAGAGcgagagcagGAgGcUCGGGACCCa -3'
miRNA:   3'- gUGCCG-UGUCUCa--------CUgC-AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 33954 0.67 0.963891
Target:  5'- gCGCGGCgagcagcuggaGCGGAGUucccGACGUUGcGGCUCc -3'
miRNA:   3'- -GUGCCG-----------UGUCUCA----CUGCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 34083 0.71 0.841349
Target:  5'- -uCGuGCAgGGAgGUGugGUCGAugGGCCCg -3'
miRNA:   3'- guGC-CGUgUCU-CACugCAGCU--CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 34339 0.78 0.467292
Target:  5'- aGCGGCGCAGGGcgGAgGccgUGAGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUCa-CUgCa--GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 34543 0.7 0.871204
Target:  5'- aGCGGCgACAGAGUucggccuuGugGUCGGGguGCaCCa -3'
miRNA:   3'- gUGCCG-UGUCUCA--------CugCAGCUC--UG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.