miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 155846 0.66 0.97521
Target:  5'- cCAgGGCACGGuGUcgcgcuuCGUgGAGAUCCu -3'
miRNA:   3'- -GUgCCGUGUCuCAcu-----GCAgCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 224747 0.66 0.96993
Target:  5'- gGCGGC-CAGc---GCGUCGGGGCuCCg -3'
miRNA:   3'- gUGCCGuGUCucacUGCAGCUCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 108945 0.66 0.981813
Target:  5'- gCGCGGCugucGGUGGCGUCuauGACCa -3'
miRNA:   3'- -GUGCCGugucUCACUGCAGcu-CUGGg -5'
14164 3' -55.3 NC_003521.1 + 173467 0.66 0.972662
Target:  5'- gGCGGU----AGUGGCGUCGAuaccGGCCUg -3'
miRNA:   3'- gUGCCGugucUCACUGCAGCU----CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 17339 0.66 0.981813
Target:  5'- gACGGCGCAacgcgcuGGUGGCcaacgGcCGAGACUCg -3'
miRNA:   3'- gUGCCGUGUc------UCACUG-----CaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 6590 0.66 0.97521
Target:  5'- --aGGgAuCAGAGUGAUGgggcgCGGGGCCa -3'
miRNA:   3'- gugCCgU-GUCUCACUGCa----GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 192187 0.66 0.974963
Target:  5'- uCGCGGcCACAccgguuuGGGUuuCGUCGgcGGACCCu -3'
miRNA:   3'- -GUGCC-GUGU-------CUCAcuGCAGC--UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 168553 0.66 0.980612
Target:  5'- gGCGGCGCuGgcgggcugcggguaaGGUGGCGgcu-GACCCa -3'
miRNA:   3'- gUGCCGUGuC---------------UCACUGCagcuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 104441 0.66 0.972662
Target:  5'- cCGCGGCcgaggUGGAGUGuaggaagucgcaGCGcauccUCGAGGCCCu -3'
miRNA:   3'- -GUGCCGu----GUCUCAC------------UGC-----AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 79809 0.66 0.96993
Target:  5'- cCGCGGCgaGCGGAaccUGACagagGUCGGGAUCUa -3'
miRNA:   3'- -GUGCCG--UGUCUc--ACUG----CAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 13906 0.66 0.981813
Target:  5'- -cCGGCGCGGAGggGGCcgcgGAGGCCg -3'
miRNA:   3'- guGCCGUGUCUCa-CUGcag-CUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 28861 0.66 0.96993
Target:  5'- gGCGGCGCGGc---ACgGUCGAGucGCCCa -3'
miRNA:   3'- gUGCCGUGUCucacUG-CAGCUC--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 116895 0.66 0.97521
Target:  5'- gGCGGCGCGcc--GGCGg-GAGACCCc -3'
miRNA:   3'- gUGCCGUGUcucaCUGCagCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 143140 0.66 0.97758
Target:  5'- gACGGCGagGGAGUgGGCGuccUCGAcGAUCCc -3'
miRNA:   3'- gUGCCGUg-UCUCA-CUGC---AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 198280 0.66 0.972662
Target:  5'- aGCGGCACcagcagucaucGGGGUGAC-UgGAGuuCCCu -3'
miRNA:   3'- gUGCCGUG-----------UCUCACUGcAgCUCu-GGG- -5'
14164 3' -55.3 NC_003521.1 + 69780 0.66 0.97521
Target:  5'- cCACGGCGacgagGGAGcGGcCGUCGAGAUg- -3'
miRNA:   3'- -GUGCCGUg----UCUCaCU-GCAGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 27865 0.66 0.96993
Target:  5'- aACGGCACGGAG-GACcUCGA--CCg -3'
miRNA:   3'- gUGCCGUGUCUCaCUGcAGCUcuGGg -5'
14164 3' -55.3 NC_003521.1 + 216307 0.66 0.972662
Target:  5'- -uUGGCG-GGGGUGAUGUCGGGAaagaggCCg -3'
miRNA:   3'- guGCCGUgUCUCACUGCAGCUCUg-----GG- -5'
14164 3' -55.3 NC_003521.1 + 10821 0.66 0.979566
Target:  5'- gACGGCugGGgcaucuacucucuGGUGAC--CGAGAgCCCg -3'
miRNA:   3'- gUGCCGugUC-------------UCACUGcaGCUCU-GGG- -5'
14164 3' -55.3 NC_003521.1 + 45556 0.66 0.981813
Target:  5'- gGCGGCGaauGGUGAgCGUgGAG-CCCu -3'
miRNA:   3'- gUGCCGUgucUCACU-GCAgCUCuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.