miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 52284 0.69 0.915648
Target:  5'- aGCGGCGuuCAuGGUGAUGgcgacgUGGGGCCCg -3'
miRNA:   3'- gUGCCGU--GUcUCACUGCa-----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 34083 0.71 0.841349
Target:  5'- -uCGuGCAgGGAgGUGugGUCGAugGGCCCg -3'
miRNA:   3'- guGC-CGUgUCU-CACugCAGCU--CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 109896 0.71 0.841349
Target:  5'- cCACGGCGCGGGGguagGacaGCGUCGuGuuGCCUg -3'
miRNA:   3'- -GUGCCGUGUCUCa---C---UGCAGCuC--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 165573 0.71 0.846789
Target:  5'- aCACGGCcacuCAGcgucugccagccuaAGUGACGgUGAGAUCCa -3'
miRNA:   3'- -GUGCCGu---GUC--------------UCACUGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 141364 0.71 0.849093
Target:  5'- uGCGGCgGCGGucGGUGACG-CGGuGCCCg -3'
miRNA:   3'- gUGCCG-UGUC--UCACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 34543 0.7 0.871204
Target:  5'- aGCGGCgACAGAGUucggccuuGugGUCGGGguGCaCCa -3'
miRNA:   3'- gUGCCG-UGUCUCA--------CugCAGCUC--UG-GG- -5'
14164 3' -55.3 NC_003521.1 + 120395 0.7 0.884957
Target:  5'- gACGGCACAGAG-GAUGggugcaaaGAGACa- -3'
miRNA:   3'- gUGCCGUGUCUCaCUGCag------CUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 87392 0.69 0.891525
Target:  5'- gGCGGCGgAG-GUGACGcCGAcGCUCa -3'
miRNA:   3'- gUGCCGUgUCuCACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 60577 0.69 0.89788
Target:  5'- uGCGGUACAccGAG-GAgcaGuUCGAGGCCCa -3'
miRNA:   3'- gUGCCGUGU--CUCaCUg--C-AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 206517 0.71 0.833429
Target:  5'- cCGCGGUuuauaaacguAgAGAGUGACGccCGuGGCCCg -3'
miRNA:   3'- -GUGCCG----------UgUCUCACUGCa-GCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 144540 0.71 0.825338
Target:  5'- gACGGUACGGAGUuuGGgGagaaGGGACCCa -3'
miRNA:   3'- gUGCCGUGUCUCA--CUgCag--CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 76158 0.73 0.755363
Target:  5'- aCACGGCGCAGGuacagGuCGUCGcGGGCCUg -3'
miRNA:   3'- -GUGCCGUGUCUca---CuGCAGC-UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 34339 0.78 0.467292
Target:  5'- aGCGGCGCAGGGcgGAgGccgUGAGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUCa-CUgCa--GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 214021 0.76 0.570818
Target:  5'- gACGGCGCucAGGGUGGCGUU-AGACCg -3'
miRNA:   3'- gUGCCGUG--UCUCACUGCAGcUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 102010 0.75 0.649463
Target:  5'- --aGGCACAGGGcGugGUUGAGcACCUg -3'
miRNA:   3'- gugCCGUGUCUCaCugCAGCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 168007 0.73 0.708086
Target:  5'- gACGGCgucgaACAGgucuuucuuGGUGGCGccCGAGACCCa -3'
miRNA:   3'- gUGCCG-----UGUC---------UCACUGCa-GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 5656 0.73 0.717694
Target:  5'- gGCGGCGgAGGGUGGgggGUCGAGACa- -3'
miRNA:   3'- gUGCCGUgUCUCACUg--CAGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 29759 0.73 0.717694
Target:  5'- aACGGCgACAGAGcgagagcagGAgGcUCGGGACCCa -3'
miRNA:   3'- gUGCCG-UGUCUCa--------CUgC-AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 151319 0.73 0.727234
Target:  5'- gGCGGC-CAGgcgGGUGGCGUCcGAGGgCCu -3'
miRNA:   3'- gUGCCGuGUC---UCACUGCAG-CUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 180552 0.73 0.727234
Target:  5'- cCGCGGCGuacCGGGGUGGCG-CGAGAUg- -3'
miRNA:   3'- -GUGCCGU---GUCUCACUGCaGCUCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.