miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 35250 0.67 0.949379
Target:  5'- gACGGCACAGAG-GuCGg-GAGACa- -3'
miRNA:   3'- gUGCCGUGUCUCaCuGCagCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 36007 0.67 0.963569
Target:  5'- gACGGCgACGGAgGUGGCGgccccaCGAccgucuuGGCCCu -3'
miRNA:   3'- gUGCCG-UGUCU-CACUGCa-----GCU-------CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 37421 0.69 0.891525
Target:  5'- gACGGcCugGGAGgcGugGcCGGGACCUg -3'
miRNA:   3'- gUGCC-GugUCUCa-CugCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 37764 0.72 0.764549
Target:  5'- -cCGGCuccCAGcGUGAuuCGUCGAGAUCCa -3'
miRNA:   3'- guGCCGu--GUCuCACU--GCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 38372 0.68 0.944793
Target:  5'- aCGCuGGCAUGGuaGGUGcCGuacuuauUCGAGACCCc -3'
miRNA:   3'- -GUG-CCGUGUC--UCACuGC-------AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 39019 0.68 0.939489
Target:  5'- gCACGGCcgucagcagcgacgGCGGGuGUGGCGcCGAGGCg- -3'
miRNA:   3'- -GUGCCG--------------UGUCU-CACUGCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 39530 0.68 0.931432
Target:  5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3'
miRNA:   3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 44523 0.67 0.955585
Target:  5'- gGCGGCGCAGGGgaaucggaacacgGGgGgaggaaCGAGACUCa -3'
miRNA:   3'- gUGCCGUGUCUCa------------CUgCa-----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 45556 0.66 0.981813
Target:  5'- gGCGGCGaauGGUGAgCGUgGAG-CCCu -3'
miRNA:   3'- gUGCCGUgucUCACU-GCAgCUCuGGG- -5'
14164 3' -55.3 NC_003521.1 + 46388 0.67 0.963891
Target:  5'- aGgGGCGCGGGGUG-CGU-GGGGCgCg -3'
miRNA:   3'- gUgCCGUGUCUCACuGCAgCUCUGgG- -5'
14164 3' -55.3 NC_003521.1 + 52284 0.69 0.915648
Target:  5'- aGCGGCGuuCAuGGUGAUGgcgacgUGGGGCCCg -3'
miRNA:   3'- gUGCCGU--GUcUCACUGCa-----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 55922 0.66 0.981813
Target:  5'- gGCGGCAacgGGGGUGccaGCGggguaUGAGGCCUc -3'
miRNA:   3'- gUGCCGUg--UCUCAC---UGCa----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 56807 0.67 0.963891
Target:  5'- gACGGCACcucGGGGUGggaACGUCua-ACCCa -3'
miRNA:   3'- gUGCCGUG---UCUCAC---UGCAGcucUGGG- -5'
14164 3' -55.3 NC_003521.1 + 57090 0.67 0.967008
Target:  5'- --aGGCACAGGaUGGcCGgguaGAGGCCCc -3'
miRNA:   3'- gugCCGUGUCUcACU-GCag--CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 57514 0.67 0.955585
Target:  5'- gCACGGCGCuGAucacgGGCGagauuuugcagagCGAGGCCCc -3'
miRNA:   3'- -GUGCCGUGuCUca---CUGCa------------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 60577 0.69 0.89788
Target:  5'- uGCGGUACAccGAG-GAgcaGuUCGAGGCCCa -3'
miRNA:   3'- gUGCCGUGU--CUCaCUg--C-AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 66866 0.74 0.698418
Target:  5'- cCugGGCACGGuGacUGugGcCGAGACCa -3'
miRNA:   3'- -GugCCGUGUCuC--ACugCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 68907 0.68 0.945221
Target:  5'- -uCGGCACAGAG-GuCGggggCGAGACa- -3'
miRNA:   3'- guGCCGUGUCUCaCuGCa---GCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 69505 0.81 0.329145
Target:  5'- gACGGCGCAGGcc-GCGUUGAGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUcacUGCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 69780 0.66 0.97521
Target:  5'- cCACGGCGacgagGGAGcGGcCGUCGAGAUg- -3'
miRNA:   3'- -GUGCCGUg----UCUCaCU-GCAGCUCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.