miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 5' -60.8 NC_003521.1 + 78135 0.66 0.799846
Target:  5'- gGUGGGCGCgUUag-CGGCgGCGGCc- -3'
miRNA:   3'- -CGCCCGCGgAAggaGUUGgCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 234142 0.66 0.799846
Target:  5'- cGCGGGCGCaggcCCUgCAGCacgaGCGG-GAc -3'
miRNA:   3'- -CGCCCGCGgaa-GGA-GUUGg---CGCCgCU- -5'
14164 5' -60.8 NC_003521.1 + 52437 0.66 0.799846
Target:  5'- cGCGuGGCGgUUUCUUCuGuuGCGGCu- -3'
miRNA:   3'- -CGC-CCGCgGAAGGAGuUggCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 5546 0.66 0.808154
Target:  5'- gGCGGcGCGUCgUUCCUCccgguugcgGGCUcgGCGGUGGa -3'
miRNA:   3'- -CGCC-CGCGG-AAGGAG---------UUGG--CGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 99954 0.66 0.799846
Target:  5'- gGgGGGCGgCggcgCCUCGGCCGagaccGCGAa -3'
miRNA:   3'- -CgCCCGCgGaa--GGAGUUGGCgc---CGCU- -5'
14164 5' -60.8 NC_003521.1 + 124208 0.66 0.839924
Target:  5'- aGCGGGC-CCUUUCUggcccgCGACCG-GGCc- -3'
miRNA:   3'- -CGCCCGcGGAAGGA------GUUGGCgCCGcu -5'
14164 5' -60.8 NC_003521.1 + 16795 0.66 0.816322
Target:  5'- gGCGacGGCGCCcgCCcCGACCGCcgGGCc- -3'
miRNA:   3'- -CGC--CCGCGGaaGGaGUUGGCG--CCGcu -5'
14164 5' -60.8 NC_003521.1 + 148865 0.66 0.83916
Target:  5'- cGCGccaGCuacgccaGCCUggCCUCGGCCGUGGCcGAc -3'
miRNA:   3'- -CGCc--CG-------CGGAa-GGAGUUGGCGCCG-CU- -5'
14164 5' -60.8 NC_003521.1 + 55750 0.66 0.832214
Target:  5'- cGCGGGCGgCagCgaCAGgCGCGGCc- -3'
miRNA:   3'- -CGCCCGCgGaaGgaGUUgGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 153174 0.66 0.799846
Target:  5'- cGUGGGCugcGCCUccagCCUgugcgaGGCCuGCGGCGGc -3'
miRNA:   3'- -CGCCCG---CGGAa---GGAg-----UUGG-CGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 141807 0.66 0.799846
Target:  5'- aGCcGGCGCCaUCgUCuacaagacGACCGCGGUa- -3'
miRNA:   3'- -CGcCCGCGGaAGgAG--------UUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 76370 0.66 0.816322
Target:  5'- aGC-GGCGaCCgugacggCCgCGGCCGCGGUGGc -3'
miRNA:   3'- -CGcCCGC-GGaa-----GGaGUUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 179932 0.66 0.808154
Target:  5'- uGCGGGaUGCCgaagaucUCCgagAACUGCGGCa- -3'
miRNA:   3'- -CGCCC-GCGGa------AGGag-UUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 93044 0.66 0.799846
Target:  5'- -gGuGGCGCUgggCUUCAacACCGUGGUGGu -3'
miRNA:   3'- cgC-CCGCGGaa-GGAGU--UGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 23551 0.66 0.808154
Target:  5'- gGUGGccaGCGCCUgcUCCUCGuCCGUcauGGUGGu -3'
miRNA:   3'- -CGCC---CGCGGA--AGGAGUuGGCG---CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 133497 0.66 0.796485
Target:  5'- --uGGCGCCgcugcugcggggCC-CAAcCCGCGGCGAu -3'
miRNA:   3'- cgcCCGCGGaa----------GGaGUU-GGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 161557 0.66 0.816322
Target:  5'- -gGGGUGCuCUUCUUCGACuCGcCGGaGAa -3'
miRNA:   3'- cgCCCGCG-GAAGGAGUUG-GC-GCCgCU- -5'
14164 5' -60.8 NC_003521.1 + 87870 0.66 0.799846
Target:  5'- cGCaGGCGCUggCCa-GGCCGuUGGCGAa -3'
miRNA:   3'- -CGcCCGCGGaaGGagUUGGC-GCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 148823 0.66 0.799846
Target:  5'- cGCGGcgacCGCCUgcCCUCGGCCGaGGUGc -3'
miRNA:   3'- -CGCCc---GCGGAa-GGAGUUGGCgCCGCu -5'
14164 5' -60.8 NC_003521.1 + 192458 0.66 0.799846
Target:  5'- gGCGgcGGCGCCgguuUCCagGACgGCGGuCGGc -3'
miRNA:   3'- -CGC--CCGCGGa---AGGagUUGgCGCC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.