miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 5' -60.8 NC_003521.1 + 148520 0.65 0.845223
Target:  5'- cGCGGcugcgccuccucccGCGCCUUCCcCGAggaCGCGGUuuGAa -3'
miRNA:   3'- -CGCC--------------CGCGGAAGGaGUUg--GCGCCG--CU- -5'
14164 5' -60.8 NC_003521.1 + 100232 0.65 0.845223
Target:  5'- aGCGGaGCGUCUcgccggccgcgaaaUCCUCGG--GCGGCGc -3'
miRNA:   3'- -CGCC-CGCGGA--------------AGGAGUUggCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 36082 0.66 0.816322
Target:  5'- gGCGgcGGCGCCUccaucaccacCCUCGccacccuccccGCCGUGGUGGu -3'
miRNA:   3'- -CGC--CCGCGGAa---------GGAGU-----------UGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 52437 0.66 0.799846
Target:  5'- cGCGuGGCGgUUUCUUCuGuuGCGGCu- -3'
miRNA:   3'- -CGC-CCGCgGAAGGAGuUggCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 91860 0.66 0.808154
Target:  5'- -aGGGCGgCggaCCagGACgGCGGCGGc -3'
miRNA:   3'- cgCCCGCgGaa-GGagUUGgCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 87870 0.66 0.799846
Target:  5'- cGCaGGCGCUggCCa-GGCCGuUGGCGAa -3'
miRNA:   3'- -CGcCCGCGGaaGGagUUGGC-GCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 234142 0.66 0.799846
Target:  5'- cGCGGGCGCaggcCCUgCAGCacgaGCGG-GAc -3'
miRNA:   3'- -CGCCCGCGgaa-GGA-GUUGg---CGCCgCU- -5'
14164 5' -60.8 NC_003521.1 + 192458 0.66 0.799846
Target:  5'- gGCGgcGGCGCCgguuUCCagGACgGCGGuCGGc -3'
miRNA:   3'- -CGC--CCGCGGa---AGGagUUGgCGCC-GCU- -5'
14164 5' -60.8 NC_003521.1 + 133497 0.66 0.796485
Target:  5'- --uGGCGCCgcugcugcggggCC-CAAcCCGCGGCGAu -3'
miRNA:   3'- cgcCCGCGGaa----------GGaGUU-GGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 43565 0.66 0.811438
Target:  5'- cGCcGGCGCCgcgucaagcaccgcUCCUCGG--GCGGCGAc -3'
miRNA:   3'- -CGcCCGCGGa-------------AGGAGUUggCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 16887 0.66 0.824344
Target:  5'- cGCGGcCGCCUcgacccCCUCGGCCGCGcCu- -3'
miRNA:   3'- -CGCCcGCGGAa-----GGAGUUGGCGCcGcu -5'
14164 5' -60.8 NC_003521.1 + 73152 0.66 0.824344
Target:  5'- gGCGgcGGCGCCg-CCUCGGCCuGCGaccuggacGCGGa -3'
miRNA:   3'- -CGC--CCGCGGaaGGAGUUGG-CGC--------CGCU- -5'
14164 5' -60.8 NC_003521.1 + 78135 0.66 0.799846
Target:  5'- gGUGGGCGCgUUag-CGGCgGCGGCc- -3'
miRNA:   3'- -CGCCCGCGgAAggaGUUGgCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 169100 0.66 0.808154
Target:  5'- uGCGGuGCGUCUUUCUCuuguuaGCGGgGGc -3'
miRNA:   3'- -CGCC-CGCGGAAGGAGuugg--CGCCgCU- -5'
14164 5' -60.8 NC_003521.1 + 155616 0.66 0.816322
Target:  5'- -gGuGGCGaCCgcugUUCUCGGCgGCGGUGGu -3'
miRNA:   3'- cgC-CCGC-GGa---AGGAGUUGgCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 80011 0.66 0.816322
Target:  5'- uUGGGCGgCUUCU---GCUGCGGCu- -3'
miRNA:   3'- cGCCCGCgGAAGGaguUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 227610 0.66 0.816322
Target:  5'- uUGGGCGCCggucggcCCUcCAACa-CGGCGGc -3'
miRNA:   3'- cGCCCGCGGaa-----GGA-GUUGgcGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 28837 0.66 0.808154
Target:  5'- uGC-GGCGCCUggaCgacgAGCUGCGGCGGc -3'
miRNA:   3'- -CGcCCGCGGAag-Gag--UUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 95976 0.66 0.824344
Target:  5'- cGCGGGgagcgaucucCGCUgUCgUCucCCGCGGCGc -3'
miRNA:   3'- -CGCCC----------GCGGaAGgAGuuGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 166868 0.66 0.816322
Target:  5'- gGCGGGCGCaggUCguacaUCAAguCCGCgGGCGc -3'
miRNA:   3'- -CGCCCGCGga-AGg----AGUU--GGCG-CCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.