miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 5' -60.8 NC_003521.1 + 70126 0.71 0.558683
Target:  5'- -aGGGcCGCUaucagggCCUCgAGCUGCGGCGAg -3'
miRNA:   3'- cgCCC-GCGGaa-----GGAG-UUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 135388 0.73 0.441945
Target:  5'- cGCGGGCGCCaaaCCgu-GCCGaGGCGGg -3'
miRNA:   3'- -CGCCCGCGGaa-GGaguUGGCgCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 221826 0.72 0.467748
Target:  5'- gGCGGGCGUguCUcCCUCGuCgCGCGGCGc -3'
miRNA:   3'- -CGCCCGCG--GAaGGAGUuG-GCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 6390 0.72 0.485374
Target:  5'- -gGGGCGCCgcagCU---ACCGCGGCGGc -3'
miRNA:   3'- cgCCCGCGGaa--GGaguUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 162366 0.72 0.494305
Target:  5'- cCGGGcCGCgUUCC-CAGCCGCGcCGAa -3'
miRNA:   3'- cGCCC-GCGgAAGGaGUUGGCGCcGCU- -5'
14164 5' -60.8 NC_003521.1 + 116328 0.72 0.501504
Target:  5'- cGUGGGCGgCUUCCUCAcgcgcuacgaccaGCCGCccgacgaGGcCGAg -3'
miRNA:   3'- -CGCCCGCgGAAGGAGU-------------UGGCG-------CC-GCU- -5'
14164 5' -60.8 NC_003521.1 + 61845 0.71 0.539998
Target:  5'- -aGGGCGCCg--CggAACCGCGGCGc -3'
miRNA:   3'- cgCCCGCGGaagGagUUGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 45450 0.71 0.549316
Target:  5'- aCGGGCGCCUcgUCCUCGggcgucaccuucACC-CGGCc- -3'
miRNA:   3'- cGCCCGCGGA--AGGAGU------------UGGcGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 139792 0.71 0.549316
Target:  5'- --uGGCGUCgcCCUCGGCgGUGGCGAa -3'
miRNA:   3'- cgcCCGCGGaaGGAGUUGgCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 104697 0.73 0.433524
Target:  5'- cGUGGGCGgCgucgacgugcCCUCGACCGCGGUc- -3'
miRNA:   3'- -CGCCCGCgGaa--------GGAGUUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 68437 0.73 0.433524
Target:  5'- cGCcGGCGCC--CCUCAACCGCGuGCc- -3'
miRNA:   3'- -CGcCCGCGGaaGGAGUUGGCGC-CGcu -5'
14164 5' -60.8 NC_003521.1 + 115400 0.74 0.400801
Target:  5'- cGCGGGCgGCCgccacggCCUCcggacucagcGCCGCGGCGc -3'
miRNA:   3'- -CGCCCG-CGGaa-----GGAGu---------UGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 145258 0.82 0.121048
Target:  5'- uGCaGGGCGCC-UCCUCGGCCuCGGCGGc -3'
miRNA:   3'- -CG-CCCGCGGaAGGAGUUGGcGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 111599 0.78 0.229279
Target:  5'- cGUGGuaGUCUUCCUCucgccCCGCGGCGAc -3'
miRNA:   3'- -CGCCcgCGGAAGGAGuu---GGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 151225 0.77 0.27434
Target:  5'- cCGcGGCGCCUUCUUCAucuucuuCCGCGGCc- -3'
miRNA:   3'- cGC-CCGCGGAAGGAGUu------GGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 240034 0.75 0.340281
Target:  5'- gGCgGGGCGCCgggcggUCCUCcGCCGaUGGCGc -3'
miRNA:   3'- -CG-CCCGCGGa-----AGGAGuUGGC-GCCGCu -5'
14164 5' -60.8 NC_003521.1 + 130274 0.75 0.362926
Target:  5'- cGUGGGCGCCcucUCCggcuaccugggcgaGGCCGCGGCGc -3'
miRNA:   3'- -CGCCCGCGGa--AGGag------------UUGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 221912 0.74 0.377314
Target:  5'- cGCGcGGCGCCaccCUUCGgggcuGCCGCGGCGc -3'
miRNA:   3'- -CGC-CCGCGGaa-GGAGU-----UGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 135339 0.74 0.382711
Target:  5'- gGCGGGuUGCCUcCCUCccgcgcgcgccgucuCCGCGGCGGu -3'
miRNA:   3'- -CGCCC-GCGGAaGGAGuu-------------GGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 223833 0.74 0.392869
Target:  5'- cGCGGGCGCCUgcugUCCcugCGgcugcuGCUGCGGCu- -3'
miRNA:   3'- -CGCCCGCGGA----AGGa--GU------UGGCGCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.