miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 5' -60.8 NC_003521.1 + 100335 1.1 0.001548
Target:  5'- cGCGGGCGCCUUCCUCAACCGCGGCGAa -3'
miRNA:   3'- -CGCCCGCGGAAGGAGUUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 45538 0.84 0.097056
Target:  5'- aGCGGGCGCC--CCgUCAGCgGCGGCGAa -3'
miRNA:   3'- -CGCCCGCGGaaGG-AGUUGgCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 145258 0.82 0.121048
Target:  5'- uGCaGGGCGCC-UCCUCGGCCuCGGCGGc -3'
miRNA:   3'- -CG-CCCGCGGaAGGAGUUGGcGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 111599 0.78 0.229279
Target:  5'- cGUGGuaGUCUUCCUCucgccCCGCGGCGAc -3'
miRNA:   3'- -CGCCcgCGGAAGGAGuu---GGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 167158 0.77 0.245398
Target:  5'- uUGGGCGCCUcgggcgUCUuggaggCGGCCGCGGCGGa -3'
miRNA:   3'- cGCCCGCGGA------AGGa-----GUUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 208673 0.77 0.25666
Target:  5'- cGCGGGCGCCUUCC---GCCGCuuGGUGc -3'
miRNA:   3'- -CGCCCGCGGAAGGaguUGGCG--CCGCu -5'
14164 5' -60.8 NC_003521.1 + 151225 0.77 0.27434
Target:  5'- cCGcGGCGCCUUCUUCAucuucuuCCGCGGCc- -3'
miRNA:   3'- cGC-CCGCGGAAGGAGUu------GGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 24683 0.75 0.319357
Target:  5'- uGCGcccaGGUgGCCUUCCUCuGCCGCGGCc- -3'
miRNA:   3'- -CGC----CCG-CGGAAGGAGuUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 205337 0.75 0.333197
Target:  5'- --cGGCGCC-UCCUCGGCgGCGGCa- -3'
miRNA:   3'- cgcCCGCGGaAGGAGUUGgCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 240034 0.75 0.340281
Target:  5'- gGCgGGGCGCCgggcggUCCUCcGCCGaUGGCGc -3'
miRNA:   3'- -CG-CCCGCGGa-----AGGAGuUGGC-GCCGCu -5'
14164 5' -60.8 NC_003521.1 + 39807 0.75 0.340281
Target:  5'- gGCgGGGCGCCgggcggUCCUCcGCCGaUGGCGc -3'
miRNA:   3'- -CG-CCCGCGGa-----AGGAGuUGGC-GCCGCu -5'
14164 5' -60.8 NC_003521.1 + 196980 0.75 0.347473
Target:  5'- -gGGGCGCCUgugacgggCCcgCGGCCGgCGGCGGc -3'
miRNA:   3'- cgCCCGCGGAa-------GGa-GUUGGC-GCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 84731 0.75 0.354773
Target:  5'- cGCGGGCacugccgucgucGUCUUgCUCGGgCGCGGCGGc -3'
miRNA:   3'- -CGCCCG------------CGGAAgGAGUUgGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 168571 0.75 0.36218
Target:  5'- cGCGGGCcagaaguacgccGCCUUCCUCAAguaCGUgcacGGCGAg -3'
miRNA:   3'- -CGCCCG------------CGGAAGGAGUUg--GCG----CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 130274 0.75 0.362926
Target:  5'- cGUGGGCGCCcucUCCggcuaccugggcgaGGCCGCGGCGc -3'
miRNA:   3'- -CGCCCGCGGa--AGGag------------UUGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 221912 0.74 0.377314
Target:  5'- cGCGcGGCGCCaccCUUCGgggcuGCCGCGGCGc -3'
miRNA:   3'- -CGC-CCGCGGaa-GGAGU-----UGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 135339 0.74 0.382711
Target:  5'- gGCGGGuUGCCUcCCUCccgcgcgcgccgucuCCGCGGCGGu -3'
miRNA:   3'- -CGCCC-GCGGAaGGAGuu-------------GGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 223833 0.74 0.392869
Target:  5'- cGCGGGCGCCUgcugUCCcugCGgcugcuGCUGCGGCu- -3'
miRNA:   3'- -CGCCCGCGGA----AGGa--GU------UGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 95095 0.74 0.400801
Target:  5'- uCGGGCGCCUUgagCGGCCGCGcGCGc -3'
miRNA:   3'- cGCCCGCGGAAggaGUUGGCGC-CGCu -5'
14164 5' -60.8 NC_003521.1 + 115400 0.74 0.400801
Target:  5'- cGCGGGCgGCCgccacggCCUCcggacucagcGCCGCGGCGc -3'
miRNA:   3'- -CGCCCG-CGGaa-----GGAGu---------UGGCGCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.