miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 5' -60.8 NC_003521.1 + 4854 0.71 0.549316
Target:  5'- uGCGGGCGUCgaCgUCgAAUCGCGGCc- -3'
miRNA:   3'- -CGCCCGCGGaaGgAG-UUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 5319 0.67 0.78284
Target:  5'- gGCGGcGUGCCccgCCggccgCGACUcCGGCGAu -3'
miRNA:   3'- -CGCC-CGCGGaa-GGa----GUUGGcGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 5546 0.66 0.808154
Target:  5'- gGCGGcGCGUCgUUCCUCccgguugcgGGCUcgGCGGUGGa -3'
miRNA:   3'- -CGCC-CGCGG-AAGGAG---------UUGG--CGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 6390 0.72 0.485374
Target:  5'- -gGGGCGCCgcagCU---ACCGCGGCGGc -3'
miRNA:   3'- cgCCCGCGGaa--GGaguUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 6604 0.68 0.738384
Target:  5'- aCGGGCGaaacggaaCCgUCUUCGgagGCCGCGcGCGAa -3'
miRNA:   3'- cGCCCGC--------GGaAGGAGU---UGGCGC-CGCU- -5'
14164 5' -60.8 NC_003521.1 + 12164 0.7 0.615633
Target:  5'- aGCGGGUGgCUUgUCgcuAUCGCGGCGAa -3'
miRNA:   3'- -CGCCCGCgGAA-GGaguUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 13605 0.67 0.756462
Target:  5'- gGUGGGUGCCgggcUCUUCGuaGCCcUGGUGAu -3'
miRNA:   3'- -CGCCCGCGGa---AGGAGU--UGGcGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 16285 0.7 0.615633
Target:  5'- uGCuGGGCGCCgugggugCCUacCGGCC-CGGCGGc -3'
miRNA:   3'- -CG-CCCGCGGaa-----GGA--GUUGGcGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 16618 0.67 0.756462
Target:  5'- aCGGGCGUcaguaccgCUggCUCugUCGCGGCGAc -3'
miRNA:   3'- cGCCCGCG--------GAagGAGuuGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 16795 0.66 0.816322
Target:  5'- gGCGacGGCGCCcgCCcCGACCGCcgGGCc- -3'
miRNA:   3'- -CGC--CCGCGGaaGGaGUUGGCG--CCGcu -5'
14164 5' -60.8 NC_003521.1 + 16887 0.66 0.824344
Target:  5'- cGCGGcCGCCUcgacccCCUCGGCCGCGcCu- -3'
miRNA:   3'- -CGCCcGCGGAa-----GGAGUUGGCGCcGcu -5'
14164 5' -60.8 NC_003521.1 + 18447 0.68 0.710679
Target:  5'- cGCGGccuGUGCCg-CUUCGACCgcgggcugcGCGGCGAg -3'
miRNA:   3'- -CGCC---CGCGGaaGGAGUUGG---------CGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 20654 0.73 0.441945
Target:  5'- gGUGGGCGCCUaCgUgaUGACCGUGGCGc -3'
miRNA:   3'- -CGCCCGCGGAaGgA--GUUGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 20697 0.67 0.786281
Target:  5'- aCGGGCcugGCCUUUCUgGgcggacgcgacccguACCGCuGGCGGu -3'
miRNA:   3'- cGCCCG---CGGAAGGAgU---------------UGGCG-CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 21771 0.7 0.577546
Target:  5'- cUGGGCGCCguggcgugCCUgu-CCGUGGCGGu -3'
miRNA:   3'- cGCCCGCGGaa------GGAguuGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 21934 0.69 0.672957
Target:  5'- gGCGGGCgGCCUcgggCUggagcagugggCGAgCGCGGCGGg -3'
miRNA:   3'- -CGCCCG-CGGAa---GGa----------GUUgGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 23551 0.66 0.808154
Target:  5'- gGUGGccaGCGCCUgcUCCUCGuCCGUcauGGUGGu -3'
miRNA:   3'- -CGCC---CGCGGA--AGGAGUuGGCG---CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 24683 0.75 0.319357
Target:  5'- uGCGcccaGGUgGCCUUCCUCuGCCGCGGCc- -3'
miRNA:   3'- -CGC----CCG-CGGAAGGAGuUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 28837 0.66 0.808154
Target:  5'- uGC-GGCGCCUggaCgacgAGCUGCGGCGGc -3'
miRNA:   3'- -CGcCCGCGGAag-Gag--UUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 30842 0.69 0.663435
Target:  5'- aCGGGCGCCUUgCgacggCAGCgGuUGGCGu -3'
miRNA:   3'- cGCCCGCGGAAgGa----GUUGgC-GCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.