miRNA display CGI


Results 41 - 60 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 5' -61.8 NC_003521.1 + 37011 0.66 0.770953
Target:  5'- uCGcGGCGGAGUcaggaccgacaggaGUcCUCGUCGGCgGCc -3'
miRNA:   3'- -GCuUCGCCUCG--------------CA-GAGCGGCCGgCGc -5'
14165 5' -61.8 NC_003521.1 + 84197 0.66 0.770084
Target:  5'- gGAAGCccaGGGCGUCgcgcagcaccaggCGCgagaGGCCGCGc -3'
miRNA:   3'- gCUUCGc--CUCGCAGa------------GCGg---CCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 209510 0.66 0.764847
Target:  5'- ---cGUGGGGgGUCacggugaccgUCGCCGcuGCCGCGg -3'
miRNA:   3'- gcuuCGCCUCgCAG----------AGCGGC--CGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 6306 0.66 0.764847
Target:  5'- uCGAAGCuggcugaaagGGAuccCGUCUUGCCGGCgauaggaucCGCGg -3'
miRNA:   3'- -GCUUCG----------CCUc--GCAGAGCGGCCG---------GCGC- -5'
14165 5' -61.8 NC_003521.1 + 39010 0.66 0.764847
Target:  5'- uCGAGGcCGGAGCGgg-CGCC-GCCGa- -3'
miRNA:   3'- -GCUUC-GCCUCGCagaGCGGcCGGCgc -5'
14165 5' -61.8 NC_003521.1 + 112367 0.66 0.764847
Target:  5'- aCGcGGCGGcugcGGCGUCUCGUCcaccuGGCUgGCGc -3'
miRNA:   3'- -GCuUCGCC----UCGCAGAGCGG-----CCGG-CGC- -5'
14165 5' -61.8 NC_003521.1 + 192165 0.66 0.764847
Target:  5'- aGGucuGCGG--UGUCagCGCCGGUCGCGg -3'
miRNA:   3'- gCUu--CGCCucGCAGa-GCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 44299 0.66 0.764847
Target:  5'- gGGAGCuGGGCGggUUGCUguGGCCGCu -3'
miRNA:   3'- gCUUCGcCUCGCagAGCGG--CCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 72979 0.66 0.764847
Target:  5'- aGAAGCGGccGCGggggGCCuGGCCGCu -3'
miRNA:   3'- gCUUCGCCu-CGCagagCGG-CCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 97273 0.66 0.764847
Target:  5'- gCGAuGGCGGcugcuGC-UCgUCGCCGGCgGCGc -3'
miRNA:   3'- -GCU-UCGCCu----CGcAG-AGCGGCCGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 14726 0.66 0.764847
Target:  5'- aCGccGUGGuaucuguugGGCGUgaCggGCCGGCCGCGg -3'
miRNA:   3'- -GCuuCGCC---------UCGCA--GagCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 100696 0.66 0.764847
Target:  5'- uGAuGCGGAgGCG-C-CGCCgcGGCCGCu -3'
miRNA:   3'- gCUuCGCCU-CGCaGaGCGG--CCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 179236 0.66 0.763971
Target:  5'- cCGccGCGGgccuucuGGCGccugaaCUCGCCGGCCaGCa -3'
miRNA:   3'- -GCuuCGCC-------UCGCa-----GAGCGGCCGG-CGc -5'
14165 5' -61.8 NC_003521.1 + 188231 0.66 0.763971
Target:  5'- uCGAAGCGGucgcagcAGCGguugaGCCaGCCGCa -3'
miRNA:   3'- -GCUUCGCC-------UCGCagag-CGGcCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 163715 0.67 0.75604
Target:  5'- aCGAGGCcGAauccuGCGUCgggaugagcggCGCCGGCgGCa -3'
miRNA:   3'- -GCUUCGcCU-----CGCAGa----------GCGGCCGgCGc -5'
14165 5' -61.8 NC_003521.1 + 121112 0.67 0.75604
Target:  5'- uGAAgGUGGGGUG-UUCGCUguacugggGGCCGCGc -3'
miRNA:   3'- gCUU-CGCCUCGCaGAGCGG--------CCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 92186 0.67 0.75604
Target:  5'- cCGAGcuCGGGGcCGUUuuUCGCCgcccGGCCGCGc -3'
miRNA:   3'- -GCUUc-GCCUC-GCAG--AGCGG----CCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 96691 0.67 0.75604
Target:  5'- uCGGAGCccaGGCGcacCUCGuCCaGGCCGCGg -3'
miRNA:   3'- -GCUUCGcc-UCGCa--GAGC-GG-CCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 176219 0.67 0.75604
Target:  5'- cCGAAGCGu-GuCGUCccgCGCCaGCCGCu -3'
miRNA:   3'- -GCUUCGCcuC-GCAGa--GCGGcCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 185624 0.67 0.75604
Target:  5'- gGAgccGGCGGAcuGCca-UCGCCGGUCGUGu -3'
miRNA:   3'- gCU---UCGCCU--CGcagAGCGGCCGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.