miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 233160 0.66 0.677465
Target:  5'- uGGGCaccGCUGUCCGCGCCgccgugGCgGCCgccGUUa -3'
miRNA:   3'- -CCCG---CGGCGGGCGUGGa-----CG-UGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 142454 0.66 0.676524
Target:  5'- cGGGCGCCacuucGCCCGaauCCgucgucaUGCG-CUGUCa -3'
miRNA:   3'- -CCCGCGG-----CGGGCgu-GG-------ACGUgGACAG- -5'
14167 5' -63.6 NC_003521.1 + 73448 0.66 0.676524
Target:  5'- -cGCGUCGCUCGaUAUCUGUACCcagcagcUGUCg -3'
miRNA:   3'- ccCGCGGCGGGC-GUGGACGUGG-------ACAG- -5'
14167 5' -63.6 NC_003521.1 + 87403 0.66 0.674641
Target:  5'- cGGCuGCUGCUgaccacgccgguggCGCACCUGCACgaGg- -3'
miRNA:   3'- cCCG-CGGCGG--------------GCGUGGACGUGgaCag -5'
14167 5' -63.6 NC_003521.1 + 183422 0.66 0.66804
Target:  5'- uGGGCGaCCGCaCgGCGCUgugGCGCgaGaUCg -3'
miRNA:   3'- -CCCGC-GGCG-GgCGUGGa--CGUGgaC-AG- -5'
14167 5' -63.6 NC_003521.1 + 53952 0.66 0.66804
Target:  5'- -uGUGCUGCUCGUACUUGUccuuGCCgugGUCg -3'
miRNA:   3'- ccCGCGGCGGGCGUGGACG----UGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 77049 0.66 0.66804
Target:  5'- uGGCGCCGCuaccguuguugCCGcCGCCgugaGCGCCgcUGUUg -3'
miRNA:   3'- cCCGCGGCG-----------GGC-GUGGa---CGUGG--ACAG- -5'
14167 5' -63.6 NC_003521.1 + 92499 0.66 0.66804
Target:  5'- cGGGCGUgGUCCGcCACCU-CACCc--- -3'
miRNA:   3'- -CCCGCGgCGGGC-GUGGAcGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 191769 0.66 0.66804
Target:  5'- cGGGUcCUGUCCGCACCUcccaaCAUgCUGUCg -3'
miRNA:   3'- -CCCGcGGCGGGCGUGGAc----GUG-GACAG- -5'
14167 5' -63.6 NC_003521.1 + 68633 0.66 0.66804
Target:  5'- uGGGCGCC-CUgaacaUGUGCCUGCcCCUGa- -3'
miRNA:   3'- -CCCGCGGcGG-----GCGUGGACGuGGACag -5'
14167 5' -63.6 NC_003521.1 + 91173 0.66 0.66804
Target:  5'- cGGGCa--GCCCGCACCaggagaGCACCUcgccggcggcGUCc -3'
miRNA:   3'- -CCCGcggCGGGCGUGGa-----CGUGGA----------CAG- -5'
14167 5' -63.6 NC_003521.1 + 143926 0.66 0.66804
Target:  5'- cGGcGCGCCGCauccccaacugcUCGCACCggcUGCGCgaGUg -3'
miRNA:   3'- -CC-CGCGGCG------------GGCGUGG---ACGUGgaCAg -5'
14167 5' -63.6 NC_003521.1 + 21772 0.66 0.662373
Target:  5'- uGGGCGCCGUggCGUGCCUGUccguggcggugauccAcgaCCUGUCc -3'
miRNA:   3'- -CCCGCGGCGg-GCGUGGACG---------------U---GGACAG- -5'
14167 5' -63.6 NC_003521.1 + 171312 0.66 0.658591
Target:  5'- cGGUGCUggGCCucaaCGCgGCCUGCGCC-GUCu -3'
miRNA:   3'- cCCGCGG--CGG----GCG-UGGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 33499 0.66 0.658591
Target:  5'- -cGCGCCcCCCGaagACCUGCuaucCCUGUUu -3'
miRNA:   3'- ccCGCGGcGGGCg--UGGACGu---GGACAG- -5'
14167 5' -63.6 NC_003521.1 + 170507 0.66 0.658591
Target:  5'- cGGCGucaCCGCCuCGCugcugggcgACCUGCACCg--- -3'
miRNA:   3'- cCCGC---GGCGG-GCG---------UGGACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 87782 0.66 0.658591
Target:  5'- uGGGgGCCGCCuCGUcggucucgggcgGCCUGgGCCa--- -3'
miRNA:   3'- -CCCgCGGCGG-GCG------------UGGACgUGGacag -5'
14167 5' -63.6 NC_003521.1 + 211882 0.66 0.658591
Target:  5'- aGGGCGCCGCgCGUGgUauagUGCGCCa--- -3'
miRNA:   3'- -CCCGCGGCGgGCGUgG----ACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 74706 0.66 0.658591
Target:  5'- cGGCGCCGCggcagCgGCucCCUGCucuCCUGcUCg -3'
miRNA:   3'- cCCGCGGCG-----GgCGu-GGACGu--GGAC-AG- -5'
14167 5' -63.6 NC_003521.1 + 63172 0.66 0.658591
Target:  5'- -cGCGCCGCCC-CAgacuagcuggacCCUGUACUcGUCu -3'
miRNA:   3'- ccCGCGGCGGGcGU------------GGACGUGGaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.